TCONS_00004080-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00004080-protein
Unique Name	TCONS_00004080-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	414

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00004080-protein ID=TCONS_00004080-protein|Name=TCONS_00004080-protein|organism=Clytia hemisphaerica|type=polypeptide|length=414bp
MINGYEEARKKYKSRRLVEGYLFLKSLSSNEFESGNSQLVASAVHPKLEE
NARNSSIETLLSNVPLDKRKPALLHSVSITAAANVDDEIHLQKYRSDDNK
GGGGLFELNTPSMLRSKSTIETSKDLKNRIKLTTPNRMKHLNEEAYGKRL
VLTSKHKAPYCMFSVIPYTKNKHQHNEKNTSGHYHAHHSTNLIDNVDIGD
GKREVSFWQLLIPENWKRQRNQDHENDKDFNEYHLVDYDPMMLDDPELTC
GKHRKVLTLSSYTVSIIQYAKPSAVKKDINEQFREKHPNLTITLTKLRSL
KAEIVQIAHKMNLDMAVIAGAFVYFEKVILKTRIHKNNRKCIAGASLLLS
IKFFDDVHGKNIKGCIEAIQDQLRISHKELLSCELQLLVLLEFALQIPAN
EVIPTYKRLENSLS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_002279	XLOC_002279	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00004080	TCONS_00004080	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013763	Cyclin-like
IPR006671	Cyclin_N

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013763	Cyclin-like	SMART	SM00385	cyclin_7	coord: 302..389 e-value: 0.0016 score: 27.7
IPR013763	Cyclin-like	GENE3D	1.10.472.10		coord: 162..409 e-value: 5.2E-17 score: 61.3
IPR013763	Cyclin-like	SUPERFAMILY	47954	Cyclin-like	coord: 258..398
IPR006671	Cyclin, N-terminal	PFAM	PF00134	Cyclin_N	coord: 266..395 e-value: 5.2E-7 score: 29.4
None	No IPR available	CDD	cd00043	CYCLIN	coord: 297..388 e-value: 2.5699E-5 score: 41.0701

Blast

[Close]

BLAST of TCONS_00004080-protein vs. Swiss-Prot (Human)
Match: CABL1 (CDK5 and ABL1 enzyme substrate 1 OS=Homo sapiens GN=CABLES1 PE=1 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 5.361e-56
Identity = 115/339 (33.92%), Postives = 186/339 (54.87%), Query Frame = 0

Query:  107 ELNTPSMLRSKSTIETSKDLKNRIKLTTPNRMKHLNEEAYGKRLVLTSKHKAPYCMFSVIPYTKNKHQHNEKNTSGHYHAHHSTNL-----IDNVDIGDGKREVSFWQLLIPENWKRQRNQDHENDKDFNEYH---------------------------LVDYDPMMLDDPELTCGKHRKVLTLSSYTVSIIQYAKPSAVKKDINEQFREKHPNLTITLTKLRSLKAEIVQIAHK-MNLDMAVIAGAFVYFEKVILKTRIHKNNRKCIAGASLLLSIKFFDDVHGKNIKGCIEAIQDQLRISHKELLSCELQLLVLLEFALQIPANEVIPTYKRLENS 412
            E N P  LR   T+  S   KN  K+     M+    +    R+VL S  ++   +FSV+PY ++  Q  +    G   +  + +L     ++ V++G   + VS+ Q L+P N    R    ++   F+++                             +DYDP +LDDP+  CGKH++VL   SY  ++I Y KPS +KKD+NE F+EK P++ +TL+K+RSLK E+ ++A +   L+   +A AFVYFEK+ LK +++K NRK  AGA +LL+ K   D+    +K  I+ ++++ R++ +EL++ E  +LV LEFAL +P +EV+P Y+RL  S
Sbjct:  299 EENAP--LRRCRTLSGSPRPKNFKKIHFIKNMRQ--HDTRNGRIVLISGRRSFCSIFSVLPY-RDSTQVGDLKLDGGRQSTGAVSLKEIIGLEGVELGADGKTVSYTQFLLPTNAFGARRNTIDSTSSFSQFRNLSHRSLSIGRASGTQGSLDTGSDLGDFMDYDPNLLDDPQWPCGKHKRVLIFPSYMTTVIDYVKPSDLKKDMNETFKEKFPHIKLTLSKIRSLKREMRKLAQEDCGLEEPTVAMAFVYFEKLALKGKLNKQNRKLCAGACVLLAAKIGSDLKKHEVKHLIDKLEEKFRLNRRELIAFEFPVLVALEFALHLPEHEVMPHYRRLVQS 632

The following BLAST results are available for this feature:

BLAST of TCONS_00004080-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00004080-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CABL1	5.361e-56	33.92	CDK5 and ABL1 enzyme substrate 1 OS=Homo sapiens G...	[more]

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TCONS_00004080-protein (polypeptide) - C. hemisphaerica