TCONS_00004112-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004112-protein
Unique NameTCONS_00004112-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length553

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004112-protein ID=TCONS_00004112-protein|Name=TCONS_00004112-protein|organism=Clytia hemisphaerica|type=polypeptide|length=553bp
LIVPTLHHLMLTKNLGVLHQLHQITQRSLNFLRYNQTRNLQRSTISMVLD
LELFRADKGGCPDKIKENQSKRFKDVKLVDTVIECDGKWRKLRFQADNWN
KLINLCSKTIGKKMKNKEPVGDSDAIPDTLTTAEQLQEIKPETLEQLTVR
QIKKLRTMIDDNMKKCVAERVECEKVRHSNLFEVGNWLHESVVVSKDEAE
NEIVRTWGDVSQRKKYSHFDLLVMIDGVDYERGASVSGNRGYFLKGAGVL
LQQALKNLAVQILLKKGFTPLYTPFFMKKEVMQEVAQLSQFDDELYKVIG
KGSEKEDDKSVSENYLIATSEQPIAAYHRGEWMDTAELPKKYAGVSTCFR
QEVGSHGRDTRGIFRVHQFEKIEQFVICSPHDNQSWELLDEMVNNAEEFY
QALNIPYQIVGIVSGALNNAAAKKLDLEAWFPGSGAFRELCSCSNCTDYQ
SRRLLVRYGQTKKMNDKAEFCHMLNATMCATTRVICCILENNQTEDGIVV
PALLRPFMGNMDFIKFVKPAPIDEQAKPSNKKKGNKNKDKETVTDKMQKM
DVK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002290XLOC_002290Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004112TCONS_00004112Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002317Ser-tRNA-ligase_type_1
IPR015866Ser-tRNA-synth_1_N
IPR002314aa-tRNA-synt_IIb
IPR006195aa-tRNA-synth_II
IPR033729SerRS_core
IPR010978tRNA-bd_arm
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0004828serine-tRNA ligase activity
GO:0005524ATP binding
GO:0004812aminoacyl-tRNA ligase activity
Vocabulary: Biological Process
TermDefinition
GO:0006434seryl-tRNA aminoacylation
GO:0006418tRNA aminoacylation for protein translation
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006434 seryl-tRNA aminoacylation
biological_process GO:0006418 tRNA aminoacylation for protein translation
cellular_component GO:0005737 cytoplasm
molecular_function GO:0004812 aminoacyl-tRNA ligase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0004828 serine-tRNA ligase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002317Serine-tRNA ligase, type1PRINTSPR00981TRNASYNTHSERcoord: 441..457
score: 61.87
coord: 352..364
score: 63.25
coord: 364..377
score: 62.7
coord: 423..439
score: 56.43
coord: 406..419
score: 43.39
IPR002317Serine-tRNA ligase, type1TIGRFAMTIGR00414TIGR00414coord: 61..508
e-value: 1.3E-121
score: 404.5
NoneNo IPR availableGENE3D1.10.287.40coord: 48..184
e-value: 2.5E-25
score: 88.5
NoneNo IPR availableGENE3D3.30.930.10coord: 186..532
e-value: 3.4E-97
score: 324.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 524..553
NoneNo IPR availableSUPERFAMILY55681Class II aaRS and biotin synthetasescoord: 201..509
IPR015866Serine-tRNA synthetase, type1, N-terminalPFAMPF02403Seryl_tRNA_Ncoord: 48..158
e-value: 1.5E-17
score: 63.6
IPR002314Aminoacyl-tRNA synthetase, class II (G/ P/ S/T)PFAMPF00587tRNA-synt_2bcoord: 308..492
e-value: 1.2E-36
score: 126.3
IPR006195Aminoacyl-tRNA synthetase, class IIPROSITEPS50862AA_TRNA_LIGASE_IIcoord: 244..501
score: 19.032
IPR033729Serine-tRNA ligase catalytic core domainCDDcd00770SerRS_corecoord: 200..508
e-value: 2.58525E-177
score: 504.401
IPR010978tRNA-binding armSUPERFAMILY46589tRNA-binding armcoord: 49..130

Blast
[Close]
BLAST of TCONS_00004112-protein vs. Swiss-Prot (Human)
Match: SYSC (Serine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=SARS PE=1 SV=3)

HSP 1 Score: 674.085 bits (1738), Expect = 0.000e+0
Identity = 326/514 (63.42%), Postives = 395/514 (76.85%), Query Frame = 0 
Query:   47 MVLDLELFRADKGGCPDKIKENQSKRFKDVKLVDTVIECDGKWRKLRFQADNWNKLINLCSKTIGKKMKNKEPVGDSDAIPDTLTTAEQLQEIKPETLEQLTVRQIKKLRTMIDDNMKKCVAERVECEKVRHSNLFEVGNWLHESVVVSKDE-AENEIVRTWGDVSQRKKYSHFDLLVMIDGVDYERGASVSGNRGYFLKGAGVLLQQALKNLAVQILLKKGFTPLYTPFFMKKEVMQEVAQLSQFDDELYKVIGKGSEKEDDKSVSENYLIATSEQPIAAYHRGEWMDTAELPKKYAGVSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVICSPHDNQSWELLDEMVNNAEEFYQALNIPYQIVGIVSGALNNAAAKKLDLEAWFPGSGAFRELCSCSNCTDYQSRRLLVRYGQTKKMNDKAEFCHMLNATMCATTRVICCILENNQTEDGIVVPALLRPFM--GNMDFIKFVKPAPIDEQAKPSNKKKGNKNKDKE-----TVTDKMQKMDV 552
            MVLDL+LFR DKGG P  I+E Q KRFKD  LVD +++ D +WR+ RF+ADN NKL NLCSKTIG+KMK KEPVGD +++P+ + +     ++  + L  L V QIKK+R +ID+ + KC AER++ E  R  NL E+GN LH SV +S DE  +N++ R WGD + RKKYSH DL+VM+DG + E+GA V+G+RGYFLKG  V L+QAL   A++ L  +G+ P+YTPFFM+KEVMQEVAQLSQFD+ELYKVIGKGSEK DD S  E YLIATSEQPIAA HR EW+   +LP KYAG+STCFRQEVGSHGRDTRGIFRVHQFEKIEQFV  SPHDN+SWE+ +EM+  AEEFYQ+L IPY IV IVSG+LN+AA+KKLDLEAWFPGSGAFREL SCSNCTDYQ+RRL +RYGQTKKM DK EF HMLNATMCATTR IC ILEN QTE GI VP  L+ FM  G  + I FVKPAPI+++     KK+   +K K      T+ +++Q M+V
Sbjct:    1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLCSKTIGEKMKKKEPVGDDESVPENVLS---FDDLTADALANLKVSQIKKVRLLIDEAILKCDAERIKLEAERFENLREIGNLLHPSVPISNDEDVDNKVERIWGDCTVRKKYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKVEFVHMLNATMCATTRTICAILENYQTEKGITVPEKLKEFMPPGLQELIPFVKPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQNMEV 511
The following BLAST results are available for this feature:
BLAST of TCONS_00004112-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYSC0.000e+063.42Serine--tRNA ligase, cytoplasmic OS=Homo sapiens G... [more]
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