TCONS_00004133-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00004133-protein
Unique Name	TCONS_00004133-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	842

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00004133-protein ID=TCONS_00004133-protein|Name=TCONS_00004133-protein|organism=Clytia hemisphaerica|type=polypeptide|length=842bp
QVYGVRTSSRSVNIFSTIAGLIGLMRDFYKGIEKEHLYPYLPEFLSTCSQ
QLALPDGPSSDCGIKMEILKALEVLVKHFPKYMLQHITSILPPVWAIFTQ
SVDHYIKTTINCIDSTDDVVDEDGEILSFENLVYSTFEFIVALVESSKFK
KTVQQYLEEILFFTMVYMQITDEQVDLWSNDPNQFVEDEDEETLSYSVRI
SAQFLILTLCQRFKEAPQKLFNAVGRLKLKGDELRTQGDEHWWKYYEVIL
LCLGYVQQSILEKVETGELKDDFKNSVKEMLVTACSTEAGSAFLVGQSFW
TSSKLAAILDDQSISHFLQATVGALGEGQNTVLRVFAVKSLYGFCDYLRD
SNKTNLLHPFLEQIAAGILSMATQFSESVLALTLETLMIVIKVNLEFTST
LVQNSQLIPLINALYLKYATDHHLEPIIEDLLGDLAEIPTCYAVIMEKIV
PTLLSILEAPEDKVPPVMVAPTIDVLTVLIRKGPKPIQQSFILNTFPLVS
KKALQSDDEGIIQNCGECIRAFIACSAEEVFSWQDGSGHNGLYYIVQVTC
KLLDPKASESSAMFIGKLINTLVIKGGNVLGDNLEIILRSVLSKLQQAKT
FSVIQSLLMVFIQLIRYQIEATLEFLSTVPGPTGKSALDYVLTEWCSKQD
SFFGNYETKVSYDALCKLLLHAVTTGDSRFEEIVVPDQQMNDTQEIMTRS
KAKQAKTQTTFIPVGIKLFKLVVNEMMLQMEQVENDADDSEDEDGDDWED
VDEDGRPPKDMTIQQAIEAIFSPAGDFAGFGDDEEDEDDPDTLDDPINQV
KLKDWLNEFIRSFSQQPCFSNFVQTLNENERQCLIQLQVVVS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_002299	XLOC_002299	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00004133	TCONS_00004133	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011989	ARM-like
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 723..743
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 774..796
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 734..759
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 8..837 e-value: 4.0E-41 score: 140.6
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 35..104 coord: 132..674 coord: 711..837

Blast

[Close]

BLAST of TCONS_00004133-protein vs. Swiss-Prot (Human)
Match: IPO9 (Importin-9 OS=Homo sapiens GN=IPO9 PE=1 SV=3)

HSP 1 Score: 693.73 bits (1789), Expect = 0.000e+0
Identity = 351/840 (41.79%), Postives = 543/840 (64.64%), Query Frame = 0

Query:    1 QVYGVRTSSRSVNIFSTIAGLIGLMRDFYKGIEKEHLYPYLPEFLSTCSQQLALPDGPSSDCGIKMEILKALEVLVKHFPKYMLQHITSILPPVWAIFTQSVDHYIKTTINCIDSTDDVVDEDGEILSFENLVYSTFEFIVALVESSKFKKTVQQYLEEILFFTMVYMQITDEQVDLWSNDPNQFVEDEDEETLSYSVRISAQFLILTLCQRFK-EAPQKLFNAVGRLKLKGDELRTQGDEHWWKYYEVILLCLGYVQQSILEKVETGELKDDFKNSVKEMLVTACSTEAGSAFLVGQSFWTSSKLAAILDDQSISHFLQATVGALGEGQNTVLRVFAVKSLYGFCDYLRDSNKTNLLHPFLEQIAAGILSMATQFSESVLALTLETLMIVIKVNLEFTSTLVQNSQLIPLINALYLKYATDHHLEPIIEDLLGDLAEIPTCYAVIMEKIVPTLLSILEAPEDKVPPVMVAPTIDVLTVLIRKGPKPIQQSFILNTFPLVSKKALQSDDEGIIQNCGECIRAFIACSAEEVFSWQDGSGHNGLYYIVQVTCKLLDPKASESSAMFIGKLINTLVIKGGNVLGDNLEIILRSVLSKLQQAKTFSVIQSLLMVFIQLIRYQIEATLEFLSTVPGPTGKSALDYVLTEWCSKQDSFFGNYETKVSYDALCKLLLHAVTTGDSRFEEIVVPDQQMNDTQE-IMTRSKAKQAKTQTTFIPVGIKLFKLVVNEMMLQME----QVENDADDSEDEDGDDWEDVDEDGRPPKDMTIQQAIEAIFSPAGDFAGFGDDEEDEDDPDTLDDPINQVKLKDWLNEFIRSFSQQPCFSNFVQTLNENERQCL 834
            +VYG+RT SR+V IF+T A +I  M +  KG  K  ++P + +F     Q L +PDGP+SD G KME+LKA+  LVK+FPK+M+  +  ILP VW   T+S   Y++T +N  +  +D VD DGE+L FENLV+S FEF+ AL+E+SKFK TV++ L E++++ ++YMQIT+EQ+ +W+ +P QFVEDED++T SY+VRI+AQ L+L +   F+ E+   L  A  R   + ++ +  G EHWWK +E  +L LG V+  I + V+ G +  D    +  +++   +    S FL+G++ W +S+    +  + I  FLQATV  L E Q   +R+ AV++++G+CD L+ S  T++L PFL  I  G++ +A QFS  VL L +ETL IV  V+ EFT+++   S++ P   A++LKY+ D  +  + +D+  +L++I  C   +  +++PTL+SI++AP DK+P  + A  ID+LT ++R    P+ Q  I   FP V++  L +DD   +QN GEC+RA+++ + E+V  W D  GHNGL+Y++QV  +LLDP+ SE +A F+G+L++TL+ K G  LG+NL+ ILR++LSK+QQA+T SV+QSL+MVF  L+  Q+E  LEFL ++PGPTGK AL++V+ EW S+Q  F+G YE KVS  ALCKLL H +   D R ++I V  +++    E I TRSK+ +   + T IP+ +K+ KL++NE+   ME    +    A+ S+D+  D WED +E+    +D    Q +  I +    +     ++++EDDPD L DP+ Q+ L+ +L +F+  F+QQPC+  F   LN+NER+ L
Sbjct:  201 EVYGIRTRSRAVEIFTTCAHMICNMEELEKGAAKVLIFPVVQQFTEAFVQALQIPDGPTSDSGFKMEVLKAVTALVKNFPKHMVSSMQQILPIVWNTLTESAAFYVRTEVNYTEEVEDPVDSDGEVLGFENLVFSIFEFVHALLENSKFKSTVKKALPELIYYIILYMQITEEQIKVWTANPQQFVEDEDDDTFSYTVRIAAQDLLLAVATDFQNESAAALAAAATRHLQEAEQTKNSGTEHWWKIHEACMLALGSVKAIITDSVKNGRIHFDMHGFLTNVILADLNLSV-SPFLLGRALWAASRFTVAMSPELIQQFLQATVSGLHETQPPSVRISAVRAIWGYCDQLKVSESTHVLQPFLPSILDGLIHLAAQFSSEVLNLVMETLCIVCTVDPEFTASM--ESKICPFTIAIFLKYSNDPVVASLAQDIFKELSQIEACQGPMQMRLIPTLVSIMQAPADKIPAGLCATAIDILTTVVRNTKPPLSQLLICQAFPAVAQCTLHTDDNATMQNGGECLRAYVSVTLEQVAQWHDEQGHNGLWYVMQVVSQLLDPRTSEFTAAFVGRLVSTLISKAGRELGENLDQILRAILSKMQQAETLSVMQSLIMVFAHLVHTQLEPLLEFLCSLPGPTGKPALEFVMAEWTSRQHLFYGQYEGKVSSVALCKLLQHGINADDKRLQDIRVKGEEIYSMDEGIRTRSKSAKNPERWTNIPLLVKILKLIINELSNVMEANAARQATPAEWSQDDSNDMWEDQEEEEEEEEDGLAGQLLSDILA-TSKYEEDYYEDDEEDDPDALKDPLYQIDLQAYLTDFLCQFAQQPCYIMFSGHLNDNERRVL 1036

The following BLAST results are available for this feature:

BLAST of TCONS_00004133-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00004133-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
IPO9	0.000e+0	41.79	Importin-9 OS=Homo sapiens GN=IPO9 PE=1 SV=3	[more]

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TCONS_00004133-protein (polypeptide) - C. hemisphaerica