TCONS_00004154-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004154-protein
Unique NameTCONS_00004154-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length966

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004154-protein ID=TCONS_00004154-protein|Name=TCONS_00004154-protein|organism=Clytia hemisphaerica|type=polypeptide|length=966bp
MADLAQLSEVLKCTLDNDNAKRKEAEKYLDSADSTPNYGLSLLHLLTAEG
ADDVVRVAAAITFKNFVKKNWRMIEGEQNKISENDRTLIKTNIVELMLKS
PDSIQRQLSEAISIIGREDFPEKWNDLLGNLTGYMKVSTDMNLKVVDGVL
QTAHSLFKRFRYEFKSQALWVELKFVLDHFASPLLDLFEGMIKRVTETAS
NPTLQKEVFEVLVMICKVFYSLNYQDLPEFFEDNIRRWMEPFHMLMVSDF
SHLIDKDSNEAGPIEKIRSQICDNVAMYAQKYDEEFQEYLPNFVQAIWNL
LTSTDSNIKNDLLVSNAIQFLASVCERPHYKDIFKAEDTLQSICQNVIVP
NMMFRDADEELFEDNPEEYIRKDIEGSDIDTRRRSACDLVRGLCKFYEQE
VTNIFSAYVNQLLSQYQSNPQSNWKAKDACIYIVTSLATKKSTAKHGTTE
TNQLVNLEDFYKTQIEPDLSASDVDQYPVLKADAIKYVITFRSVLPREVL
LKSLGYMVNLLKTNINVVHSYAANAIERLLMVRAANTTNVITPNDVLPIN
KELFLNLFGALSFPGSSENEYIMKAIMRVCTTLQDSIAPYIKDIITSLAN
KLAEVSKNPSKPQFNHYLFESICTLIRGVGKTNKPGIAVIEETIFPVVQI
ILMNDVTEFLPYVFQVLSLTLETREQGVQGPYMDLFPLLLQPVLWERQGN
VPALTRLLQAYVKRGPEEIIKSNQLNPLLGVFQKLLASRSTDHEAFYLLS
TMTELMPWNAISESMKQIFVLLFQRLQTSKTTKYVKGFIVYISIFAGKKS
PTDLQKMIDNVQPKLFGMMLEKILVSDLQKVSGMTERKICAVGVTKILTE
CPPVFEMYIEHWPKLLEALIGLFELPQDETIGADEHFIDVEDTPGYQTAF
SQLAFASKKDADPFSEIVCPKEFLAKQLYRLSTAHPGKINPLCKAVNPEA
LNFLQGYLTKAQVQLS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002306XLOC_002306Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004154TCONS_00004154Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001494Importin-beta_N
IPR013713Cse1
IPR005043CAS_CSE1_C
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0008536Ran GTPase binding
GO:0005515protein binding
GO:0005488binding
Vocabulary: Biological Process
TermDefinition
GO:0006886intracellular protein transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
molecular_function GO:0005488 binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008536 Ran GTPase binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001494Importin-beta, N-terminal domainSMARTSM00913IBN_N_2coord: 25..99
e-value: 1.1E-13
score: 61.5
IPR001494Importin-beta, N-terminal domainPFAMPF03810IBN_Ncoord: 25..98
e-value: 5.3E-15
score: 55.0
IPR001494Importin-beta, N-terminal domainPROSITEPS50166IMPORTIN_B_NTcoord: 25..99
score: 22.738
IPR013713Exportin/Importin, Cse1-likePFAMPF08506Cse1coord: 156..526
e-value: 2.1E-150
score: 500.6
IPR005043CAS/CSE, C-terminalPFAMPF03378CAS_CSE1coord: 527..957
e-value: 8.3E-151
score: 502.3
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 1..959
e-value: 3.6E-94
score: 316.1
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 1..958

Blast
[Close]
BLAST of TCONS_00004154-protein vs. Swiss-Prot (Human)
Match: XPO2 (Exportin-2 OS=Homo sapiens GN=CSE1L PE=1 SV=3)

HSP 1 Score: 1111.29 bits (2873), Expect = 0.000e+0
Identity = 550/969 (56.76%), Postives = 714/969 (73.68%), Query Frame = 0 
Query:    2 ADLAQLSEVLKCTLDNDNAKRKEAEKYLDSADSTPNYGLSLLHLLTAEGADDVVRVAAAITFKNFVKKNWRMIEGEQNKISENDRTLIKTNIVELMLKSPDSIQRQLSEAISIIGREDFPEKWNDLLGNLTGYMKVSTDMNLKVVDGVLQTAHSLFKRFRYEFKSQALWVELKFVLDHFASPLLDLFEGMIKRVTETASNPTLQKEVFEVLVMICKVFYSLNYQDLPEFFEDNIRRWMEPFHMLMVSDFSHLIDKDSNEAGPIEKIRSQICDNVAMYAQKYDEEFQEYLPNFVQAIWNLLTSTDSNIKNDLLVSNAIQFLASVCERPHYKDIFKAEDTLQSICQNVIVPNMMFRDADEELFEDNPEEYIRKDIEGSDIDTRRRSACDLVRGLCKFYEQEVTNIFSAYVNQLLSQYQSNPQSNWKAKDACIYIVTSLATKKSTAKHGTTETNQLVNLEDFYKTQIEPDLSASDVDQYPVLKADAIKYVITFRSVLPREVLLKSLGYMVNLLKTNINVVHSYAANAIERLLMVRAANTTNVITPNDVLPINKELFLNLFGALSFPGSSENEYIMKAIMRVCTTLQDSIAPYIKDIITSLANKLAEVSKNPSKPQFNHYLFESICTLIRGVGKTNKPGIAVIEETIFPVVQIILMNDVTEFLPYVFQVLSLTLETREQGVQGPYMDLFPLLLQPVLWERQGNVPALTRLLQAYVKRGPEEIIK--SNQLNPLLGVFQKLLASRSTDHEAFYLLSTMTELMPWNAISESMKQIFVLLFQRLQTSKTTKYVKGFIVYISIFAGKKSPTDLQKMIDNVQPKLFGMMLEKILVSDLQKVSGMTERKICAVGVTKILTECPPVFEM-YIEHWPKLLEALIGLFELPQDETIGADEHFIDVEDTPGYQTAFSQLAFASKKDADPFSEIV-CPKEFLAKQLYRLSTAHPGKINPLCK-AVNPEALNFLQGYLTKAQVQL 965
            A+L  L+E LK TLD D A R+ AEK+L+S +   NY L LL  L  +  D+V++V A++TFKN++K+NWR++E E NKI E DR  IK NIV LML SP+ IQ+QLS+AISIIGREDFP+KW DLL  +    +     +  V++GVL+TAHSLFKR+R+EFKS  LW E+K VLD FA PL +LF+  I+  +  A++ +  + +F  L++I K+FYSLN+QDLPEFFEDN+  WM  FH L+  D   L   D  EAG +E ++SQICDN A+YAQKYDEEFQ YLP FV AIWNLL +T   +K DLLVSNAIQFLASVCERPHYK++F+ ++TL SIC+ VIVPNM FR ADEE FEDN EEYIR+D+EGSDIDTRRR+ACDLVRGLCKF+E  VT IFS YVN +L +Y  NP  NWK KDA IY+VTSLA+K  T KHG T+ N+LVNL +F+   I PDL +++V+++PVLKAD IKY++ FR+ +P+E LL S+  ++N L+    VVH+YAA+A+ERL  +R  N   + T  ++ P  + L  NLF AL+ PGSSENEYIMKAIMR  + LQ++I PYI  +IT L  KL  VSKNPSKP FNHY+FE+IC  IR   K N   +   EE +F V   IL NDV EF+PYVFQV+SL LET +  +   YM LFP LLQPVLWER GN+PAL RLLQA+++RG   I    ++++  LLGVFQKL+AS++ DH+ FYLL+++ E MP  ++ +  KQIF+LLFQRLQ SKTTK++K F+V+I+++  K     LQ++ D +QPK+FGM+LEKI++ ++QKVSG  E+KICAVG+TK+LTECPP+ +  Y + W  LL++LIGLFELP+D+TI  +EHFID+EDTPGYQTAFSQLAFA KK+ DP  ++V  PK  LA+ L++LSTA PG++  +   ++N EAL +LQGYL  A V L
Sbjct:    6 ANLQTLTEYLKKTLDPDPAIRRPAEKFLESVEGNQNYPLLLL-TLLEKSQDNVIKVCASVTFKNYIKRNWRIVEDEPNKICEADRVAIKANIVHLMLSSPEQIQKQLSDAISIIGREDFPQKWPDLLTEMVNRFQSG---DFHVINGVLRTAHSLFKRYRHEFKSNELWTEIKLVLDAFALPLTNLFKATIELCSTHANDASALRILFSSLILISKLFYSLNFQDLPEFFEDNMETWMNNFHTLLTLDNKLLQTDDEEEAGLLELLKSQICDNAALYAQKYDEEFQRYLPRFVTAIWNLLVTTGQEVKYDLLVSNAIQFLASVCERPHYKNLFEDQNTLTSICEKVIVPNMEFRAADEEAFEDNSEEYIRRDLEGSDIDTRRRAACDLVRGLCKFFEGPVTGIFSGYVNSMLQEYAKNPSVNWKHKDAAIYLVTSLASKAQTQKHGITQANELVNLTEFFVNHILPDLKSANVNEFPVLKADGIKYIMIFRNQVPKEHLLVSIPLLINHLQAESIVVHTYAAHALERLFTMRGPNNATLFTAAEIAPFVEILLTNLFKALTLPGSSENEYIMKAIMRSFSLLQEAIIPYIPTLITQLTQKLLAVSKNPSKPHFNHYMFEAICLSIRITCKANPAAVVNFEEALFLVFTEILQNDVQEFIPYVFQVMSLLLETHKNDIPSSYMALFPHLLQPVLWERTGNIPALVRLLQAFLERGSNTIASAAADKIPGLLGVFQKLIASKANDHQGFYLLNSIIEHMPPESVDQYRKQIFILLFQRLQNSKTTKFIKSFLVFINLYCIKYGALALQEIFDGIQPKMFGMVLEKIIIPEIQKVSGNVEKKICAVGITKLLTECPPMMDTEYTKLWTPLLQSLIGLFELPEDDTIPDEEHFIDIEDTPGYQTAFSQLAFAGKKEHDPVGQMVNNPKIHLAQSLHKLSTACPGRVPSMVSTSLNAEALQYLQGYLQAASVTL 970
The following BLAST results are available for this feature:
BLAST of TCONS_00004154-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
XPO20.000e+056.76Exportin-2 OS=Homo sapiens GN=CSE1L PE=1 SV=3[more]
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