MITF (polypeptide) - C. hemisphaerica

Overview


Name	MITF
Unique Name	TCONS_00004219-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	477

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00004219-protein ID=TCONS_00004219-protein|Name=MITF|organism=Clytia hemisphaerica|type=polypeptide|length=477bp
MTCLWNENPSFLMDPDVKIKPDPDDQAMNMQTMEIMNRTNFKQALERERI
MEVERKEQMKGSQLPQQQTFLMKQQNTTHLQQNIQQQQQQPQQQQQQPQQ
QQRFFNNSNPVSFQTQRTVNNQNKGIKANMPAMSLPSSVLKVETKLQNPT
SYYLKQQQKRQVREYLEQNNQLSTNMPVSVPTALQQNYNFSSEFSSPSFM
NSFGGNPMSPNSPDAASSVASGGESNDFFEDLFSEDLNIFSATLPTNNNL
LDTYVNNPTQKNEENQISISSSCPANVKQEEPDTFFNKERQKKDNHNMIE
RRRRYNINDRIKELGTLVPKIDNDMKQNKGTILKSSVDYIRRLKKDRERL
RNVEHRSQSLEDINKKLLLRVQELELILRASNITTTLPEPDLSSAASPQL
TQLLLNKQLSQQQNSAQPTPQQQAAAFLLHKQQISTSLHELLKAPPGTSS
ETTAMSSSSVDSPRRMEDDDDCVIMDE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_002350	XLOC_002350	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00004219	TCONS_00004219	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011598	bHLH_dom
IPR031867	MiT/TFE_N

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046983	protein dimerization activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 155..175
None	No IPR available	COILS	Coil	Coil	coord: 343..363
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 201..222
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 438..477
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 297..349 e-value: 6.7E-15 score: 65.5
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 292..343 e-value: 1.2E-16 score: 60.3
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	GENE3D	4.10.280.10		coord: 290..375 e-value: 1.6E-20 score: 72.5
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 291..343 score: 17.028
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	CDD	cd00083	HLH	coord: 289..348 e-value: 9.66032E-15 score: 68.0095
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 287..352
IPR031867	MiT/TFE transcription factors, N-terminal	PFAM	PF15951	MITF_TFEB_C_3_N	coord: 80..225 e-value: 1.2E-14 score: 55.2

Blast

[Close]

BLAST of MITF vs. Swiss-Prot (Human)
Match: TFE3 (Transcription factor E3 OS=Homo sapiens GN=TFE3 PE=1 SV=4)

HSP 1 Score: 186.808 bits (473), Expect = 1.043e-52
Identity = 122/294 (41.50%), Postives = 173/294 (58.84%), Query Frame = 0

Query:  131 PAMSLPSSVLKVETKLQNPTSYYLKQQQKRQVREYLEQNNQLSTNMPVSVPTALQQNYNFSSE--FSSPSFMNSFGGNPMSPNSPDAASSVASGGES--NDFFEDLFS-------EDLNIFSA---------TLPTNNNLLDTYVNNPTQKNEENQISISSSCPA---NVKQEEPDT---FFNKERQKKDNHNMIERRRRYNINDRIKELGTLVPKI-DNDMKQNKGTILKSSVDYIRRLKKDRERLRNVEHRSQSLEDINKKLLLRVQELELILRASNITTTLPEPDLSSAAS 397
            P   +P  VLKV+T L+NPT Y+L+Q +++QV++YL      +T  P     AL      +S     +P   ++ G    +PNSP A  ++ S  E   +D  +++ S       E L+             TLP + NLLD Y    +Q      I++S+SCPA   N+K+E  +T      KERQKKDNHN+IERRRR+NINDRIKELGTL+PK  D +M+ NKGTILK+SVDYIR+L+K+++R +++E R +SLE  N+ L LR+QELEL  +   +    P P L S A+
Sbjct:  168 PPAQVPREVLKVQTHLENPTRYHLQQARRQQVKQYLS-----TTLGPKLASQALTPPPGPASAQPLPAPEAAHTTGPTGSAPNSPMALLTIGSSSEKEIDDVIDEIISLESSYNDEMLSYLPGGTTGLQLPSTLPVSGNLLDVYS---SQGVATPAITVSNSCPAELPNIKREISETEAKALLKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSSDPEMRWNKGTILKASVDYIRKLQKEQQRSKDLESRQRSLEQANRSLQLRIQELELQAQIHGLPVP-PTPGLLSLAT 452

The following BLAST results are available for this feature:

BLAST of MITF vs. Swiss-Prot (Human)

BLAST of MITF vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TFE3	1.043e-52	41.50	Transcription factor E3 OS=Homo sapiens GN=TFE3 PE...	[more]

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MITF (polypeptide) - C. hemisphaerica