TCONS_00004254-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004254-protein
Unique NameTCONS_00004254-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length270

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004254-protein ID=TCONS_00004254-protein|Name=TCONS_00004254-protein|organism=Clytia hemisphaerica|type=polypeptide|length=270bp
MSDETWDPNGSLVCPFDPLHIISVKRYQYHIIKCRKNHPNKDFVPCPFNA
KHVVLRPELKTHIAHCPNRVVLEHDIMKEQCPETGESYRLKGKTDIPRGN
YHVPETDENWDDEIEESITQRFEEHTIQSRRNYEDSGFCLRRPNMPESGE
ASQRFSVQLPDRIENRTPVFPEDSSSVHSYATRSSSIYVDPVKWNNAEFK
KTSSDKDKKLQNNVLGRGALLTKFKTKTTVGRDKSVLKPDRPHGVNVAPI
RKPFGRGTLMEAVKNYNGKK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002361XLOC_002361Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004254TCONS_00004254Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022776TRM13/UPF0224_CHHC_Znf_dom
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022776TRM13/UPF0224 family, U11-48K-like CHHC zinc finger domainPFAMPF05253zf-U11-48Kcoord: 43..67
e-value: 2.7E-8
score: 33.4
coord: 13..35
e-value: 3.1E-8
score: 33.3
IPR022776TRM13/UPF0224 family, U11-48K-like CHHC zinc finger domainPROSITEPS51800ZF_CHHC_U11_48Kcoord: 43..70
score: 14.784
IPR022776TRM13/UPF0224 family, U11-48K-like CHHC zinc finger domainPROSITEPS51800ZF_CHHC_U11_48Kcoord: 11..38
score: 14.839
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 12..41

Blast
[Close]
BLAST of TCONS_00004254-protein vs. Swiss-Prot (Human)
Match: GTSF1 (Gametocyte-specific factor 1 OS=Homo sapiens GN=GTSF1 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.494e-20
Identity = 43/118 (36.44%), Postives = 64/118 (54.24%), Query Frame = 0 
Query:    7 DPNGSLVCPFDPLHIISVKRYQYHIIKCRKNHPN--KDFVPCPFNAKHVVLRPELKTHIAHCPNRVVLEHDIMKEQCPETGESYRLKGKTDIPRGNYHVPETDENWDDEIEESITQRF 122
            DP   L CP+D  H I   R+ YH+IKCRKNHP+       CPFNA+H V R E+  HI+ C +R  +E D++        ++  L+ +T +    +  P  DE+WD ++ E  +  F
Sbjct:   10 DPEKLLQCPYDKNHQIRACRFPYHLIKCRKNHPDVASKLATCPFNARHQVPRAEISHHISSCDDRSCIEQDVV-------NQTRSLRQET-LAESTWQCPPCDEDWDKDLWEQTSTPF 119
The following BLAST results are available for this feature:
BLAST of TCONS_00004254-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GTSF12.494e-2036.44Gametocyte-specific factor 1 OS=Homo sapiens GN=GT... [more]
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