TCONS_00004280-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004280-protein
Unique NameTCONS_00004280-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length205

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004280-protein ID=TCONS_00004280-protein|Name=TCONS_00004280-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
MKTATMLNDLNGVSSSFSMEEKVARVVVLGRKGVGKTALVVRCLTKRFLP
EYAPCHETYYKYRNRDLKKDGKELEMLIIDSDGQNNDIYLNSEAFILVYS
VTSRKSLESIEAIIRKIRILNRNEAAIIIVANQIDLIQKREVSTYDGVTM
ATKHQAEYYEVSVANDVEQVVELFNKVCQRIAVDTKNKTKTTQKIIDMFK
RRGST
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002377XLOC_002377Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004280TCONS_00004280Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 159..181
score: 19.17
coord: 24..45
score: 36.57
coord: 67..89
score: 23.82
coord: 123..136
score: 30.47
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 21..184
e-value: 1.2E-13
score: 61.4
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 24..184
e-value: 2.0E-8
score: -4.6
NoneNo IPR availableGENE3D3.30.70.1390coord: 22..86
e-value: 1.6E-7
score: 30.7
NoneNo IPR availableGENE3D3.40.50.300coord: 87..182
e-value: 2.1E-19
score: 68.9
NoneNo IPR availablePROSITEPS51419RABcoord: 19..205
score: 15.255
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 23..174
e-value: 9.5E-13
score: 46.2
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 25..181
e-value: 5.8E-28
score: 97.4
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 21..188

Blast
[Close]
BLAST of TCONS_00004280-protein vs. Swiss-Prot (Human)
Match: RERG (Ras-related and estrogen-regulated growth inhibitor OS=Homo sapiens GN=RERG PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.910e-25
Identity = 57/165 (34.55%), Postives = 92/165 (55.76%), Query Frame = 0 
Query:   25 RVVVLGRKGVGKTALVVRCLTKRFLPEYAPCHETYYKYRNRDLKKDGKELEMLIIDSDGQNNDIYLN-----SEAFILVYSVTSRKSLESI---EAIIRKIRILNRNEAAIIIVANQIDLIQKREVSTYDGVTMATKHQAEYYEVSVANDVEQVVELFNKVCQRI 181
            ++ + GR GVGK+ALVVR LTKRF+ EY P  E+ Y+++      D + + M I+D+ GQ + I         E F+LVY +T R S E +   + I+ +I+        +I+V N+ DL   R+VST +G  +AT+    +YE S       + E+F ++C+ +
Sbjct:    8 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQA---TIDDEVVSMEILDTAGQEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIK--KPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 167
The following BLAST results are available for this feature:
BLAST of TCONS_00004280-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RERG2.910e-2534.55Ras-related and estrogen-regulated growth inhibito... [more]
back to top