TCONS_00004312-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00004312-protein
Unique Name	TCONS_00004312-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	977

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00004312-protein ID=TCONS_00004312-protein|Name=TCONS_00004312-protein|organism=Clytia hemisphaerica|type=polypeptide|length=977bp
EKQIAKYYKTNNYPSEKKRLHKTLMVTQAKSKNMYLVFCILALFVCHSLQ
QCTNSDFYEKQIKNHNIETRLTYLENGNYTIQALLVFSEMNTKCGQISKS
GLISMFSIRYAIGKFNDDPFYGSRARIGLQLDDSCGQLPTTMARGIEVVS
FHRNNSVCRSDFIRCNKDDVKNVDIKEASALIGTLMSFTTIPLSSLMSLY
DIPQVSPSASSRLLSKKELYKSFFRTISSDTNQIKAMLDIFKKFKWNYIF
AVGSDDDYGKLGVSDLKQLTSSLEGKEKICIYKDEYIPYQSEKTESKIKE
VVSKIKEGKDAKVVVLFLYVESIGERIIAEAQRQGVERIWLTSEAWNPAA
ATIFSKKLNLQNQTHGILSVSLQSHKLPKLQNYIKKEVLTNYKCNKWLQQ
YIQNMWGCQIDTLRQSDKAFTCQGSSEVVNSSIVIRELVTELPGGTDRLI
DAGYALGLAMNTVLNQTCPRGGSKCQIPKLRPADITDAMEKISFINDQGK
NITFNKDGEPTTAFYTIENLVHDGEKMVYQPIGNWSEKNLQLDVDAIQWP
YWFEKNTTVGEIDFPSSRCSRECQPGEFVVGRTGCCWNCHKCLSYKNYTD
TPMLDKCKTCQKYYHTLDNKVCIPTEIKWLEINDPAGMSIVIISAIGFLA
TFATTIFIAKYNALVTLYDSSKHMLSFVCVLLFLTFIYGPLHILEPNDAL
CKFRNGYFFILLMMYCAFVLVQTQAMTSYLKGHADRTFGGILLATQLLVL
LMFFLLELVSVIAWLYVDGYQLKEDRDTTSQVILKQCEVEFTAARLVSTF
IPCIILIIATFCAFRERNADHSFYEPKFLSFSCIALCIIIVAFLPTFRYV
VGIYKAIVLAYTMNVFGFTFLVCLILPKVYVGVIRKRRGKDEYPLKKSAT
KRKKNKKEDKKKQNDTQLETTSVIETTMTRPLGTVDNSTSEVSDTADIRL
DEKQLNGKQHSEQLTFSNGGNSQGEKC

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_002392	XLOC_002392	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00004312	TCONS_00004312	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000337	GPCR_3
IPR011500	GPCR_3_9-Cys_dom
IPR017978	GPCR_3_C
IPR001828	ANF_lig-bd_rcpt
IPR028082	Peripla_BP_I

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 896..916
None	No IPR available	GENE3D	3.40.50.2300		coord: 75..337 e-value: 1.2E-35 score: 122.4
None	No IPR available	GENE3D	3.40.50.2300		coord: 439..513 e-value: 2.7E-4 score: 19.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 895..977
IPR000337	GPCR, family 3	PRINTS	PR00248	GPCRMGR	coord: 101..116 score: 22.66 coord: 214..233 score: 47.97 coord: 801..824 score: 21.09 coord: 746..769 score: 24.74 coord: 249..266 score: 33.33 coord: 824..845 score: 39.35 coord: 181..207 score: 33.22 coord: 116..135 score: 30.31 coord: 233..249 score: 44.49
IPR011500	GPCR, family 3, nine cysteines domain	PFAM	PF07562	NCD3G	coord: 565..613 e-value: 5.1E-7 score: 29.5
IPR017978	GPCR family 3, C-terminal	PFAM	PF00003	7tm_3	coord: 649..881 e-value: 2.6E-18 score: 66.6
IPR017978	GPCR family 3, C-terminal	PROSITE	PS50259	G_PROTEIN_RECEP_F3_4	coord: 636..888 score: 22.793
IPR001828	Receptor, ligand binding region	PFAM	PF01094	ANF_receptor	coord: 107..523 e-value: 1.2E-46 score: 159.4
IPR028082	Periplasmic binding protein-like I	SUPERFAMILY	53822	Periplasmic binding protein-like I	coord: 92..550

Blast

[Close]

BLAST of TCONS_00004312-protein vs. Swiss-Prot (Human)
Match: GRM8 (Metabotropic glutamate receptor 8 OS=Homo sapiens GN=GRM8 PE=2 SV=2)

HSP 1 Score: 239.195 bits (609), Expect = 5.335e-66
Identity = 206/912 (22.59%), Postives = 402/912 (44.08%), Query Frame = 0

Query:   48 SLQQCTNSDFYEKQIKNHNIETRLTYLENGNYTIQALLVFSEMNTKCGQISKS-GLISMFSIRYAIGKFNDDPFYGSRARIGLQLDDSCGQLPTTMARGIEVVSFHRNNSVCRSDFIRCNKDDVKNVDIKEASALIGTLMSFTTIPLSSLMSLYDIPQVSPSASSRLLSKKELYKSFFRTISSDTNQIKAMLDIFKKFKWNYIFAVGSDDDYGKLGVSDLKQLTSSLEGKEKICIYKDEYIPYQSEKTESKIKEVVSKIKEGKDAKVVVLFLYVESIGERIIAEAQR--QGVERIWLTSEAWNPAAATIFSKKLNLQNQTHGILSVSLQSHKLPKLQNYIKKEVLTNYKCNKWLQQYIQNMWGCQIDTL-RQSDKAFTCQGSSEVVNSSIVIRELVTELPGGTDRLIDAGYALGLAMNTVLNQTCPRGGSKCQIPKLRPAD---ITDAMEKISFINDQGKNITFNKDGEPTTAFYTIENLVHDGEKMVYQPIGNWSEKNLQLDVDAIQWPYWFEKNTTVGEIDFPSSRCSRECQPGEF--VVGRTGCCWNCHKCLSYKNYTDTPMLDKCKTCQKYYHTLDNKVCIPTEIKWLEINDPAGMSIVIISAIGFLATFATTIFIAKYNALVTLYDSSKHMLSFVCVLLFLTFIYGPLHILEPNDALCKFRNGYFFILLMMYCAFVLVQTQAMTS-YLKGHADRTFGG-ILLATQLLVLLMFFLLELVSVIAWLYVD--------GYQLKEDRDTTSQVILKQCEVEFTAARLVSTFIPCIILIIATFCAFRERNADHSFYEPKFLSFSCIALCIIIVAFLPTF----RYVVGIY-KAIVLAYTMNVFGFTFLVCLILPKVYVGV------IRKRRGKDEYPLKKSATKRKKNKKEDKKKQNDTQLETTSVIETTMT 929
            ++ Q T+S  Y      H+I      +  G + + A     E    CG++ K  G+  + ++ YAI + N DP   S   +G+++ D+C +    + + +  V          SD    N D        + S +IG   S  +I +++++ L+ IPQ+S ++++  LS    Y  F R +  D+ Q +AM+DI     WNY+  + S+ +YG+ GV    Q++  + G   +CI + + IP +    E   ++++ ++ E  +A+ V++F   + I  RI+  A++  Q    +W+ S++W    A ++ +    +    G +++  +   +     Y +   L N + N W  ++ +  +GC++ +  +++     C G   +       R+   E  G    +IDA Y++  A++ +    CP     C  P++   D   +   +  ++F    G  +TFN++G+     Y I       +   Y+ IG+W+ + L L V+ +QW +         E   P+S CS  C+PGE    V    CCW+C +C  Y    D    + C   Q+    ++   C    I  LE + P  +  V ++ +G +AT    +   +YN    +  S + +   +   +FL +    L I  P+  +C FR  +  + +    A +L +T  +   + +G    T    I  A+QL++      ++L+ V  W  VD        G Q   D +    V+  +C++    + + S     ++++  T  A + R    +F E K + F+    CII +AF+P F    +    +Y +   L  +M++     L  L +PKVY+ +      ++KR+   +  +  +  + K  +K + +   + + E    +ET  +
Sbjct:   26 TMMQRTHSQEYA-----HSIRVDGDIILGGLFPVHAK---GERGVPCGELKKEKGIHRLEAMLYAIDQINKDPDLLSNITLGVRILDTCSRDTYALEQSLTFVQALIEKDA--SDVKCANGDPPIFTKPDKISGVIGAAASSVSIMVANILRLFKIPQISYASTAPELSDNTRYDFFSRVVPPDSYQAQAMVDIVTALGWNYVSTLASEGNYGESGVEAFTQISREIGG---VCIAQSQKIPREPRPGE--FEKIIKRLLETPNARAVIMFANEDDI-RRILEAAKKLNQSGHFLWIGSDSWGSKIAPVYQQ----EEIAEGAVTILPKRASIDGFDRYFRSRTLANNRRNVWFAEFWEENFGCKLGSHGKRNSHIKKCTGLERIA------RDSSYEQEGKVQFVIDAVYSMAYALHNMHKDLCPGYIGLC--PRMSTIDGKELLGYIRAVNFNGSAGTPVTFNENGD-APGRYDIFQYQITNKSTEYKVIGHWTNQ-LHLKVEDMQWAH--------REHTHPASVCSLPCKPGERKKTVKGVPCCWHCERCEGYNYQVDELSCELCPLDQR--PNMNRTGCQLIPIIKLEWHSPWAVVPVFVAILGIIATTFVIVTFVRYNDTPIVRASGRELSYVLLTGIFLCYSITFLMIAAPDTIICSFRRVFLGLGMCFSYAALLTKTNRIHRIFEQGKKSVTAPKFISPASQLVITFSLISVQLLGVFVWFVVDPPHIIIDYGEQRTLDPEKARGVL--KCDIS-DLSLICSLGYSILLMVTCTVYAIKTRGVPETFNEAKPIGFTMYTTCIIWLAFIPIFFGTAQSAEKMYIQTTTLTVSMSLSASVSLGMLYMPKVYIIIFHPEQNVQKRKRSFKAVVTAATMQSKLIQKGNDRPNGEVKSELCESLETNTS 894

The following BLAST results are available for this feature:

BLAST of TCONS_00004312-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00004312-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GRM8	5.335e-66	22.59	Metabotropic glutamate receptor 8 OS=Homo sapiens ...	[more]

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TCONS_00004312-protein (polypeptide) - C. hemisphaerica