TCONS_00004367-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004367-protein
Unique NameTCONS_00004367-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length182

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004367-protein ID=TCONS_00004367-protein|Name=TCONS_00004367-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
MAARLVHFTRTCAQLSRCSVCRMLNKTRPAASSHFYSTEPLEAPASGNLT
FPKHVEDIVDSIEKLNLLEVSSLNKLLKERLGISDIPMMASAGPAAAAPV
EEEEQAPVEAQTEFGVKLIKFDDSKKVKLIKEIKTILTDVNLVQAKKFVE
SAPQVVKEKLSKEDAEKLKAQLEGVGASVEIE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002443XLOC_002443Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004367TCONS_00004367Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013823Ribosomal_L7/L12_C
IPR008932Ribosomal_L7/L12_oligo
IPR000206Ribosomal_L7/12
IPR014719Ribosomal_L7/12_C/ClpS-like
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013823Ribosomal protein L7/L12, C-terminalPFAMPF00542Ribosomal_L12coord: 114..182
e-value: 7.5E-21
score: 74.2
IPR013823Ribosomal protein L7/L12, C-terminalPRODOMPD001326coord: 116..181
e-value: 5.0E-15
score: 195.0
IPR008932Ribosomal protein L7/L12, oligomerisationPFAMPF16320Ribosomal_L12_Ncoord: 55..98
e-value: 1.7E-15
score: 56.4
IPR008932Ribosomal protein L7/L12, oligomerisationSUPERFAMILY48300Ribosomal protein L7/12, oligomerisation (N-terminal) domaincoord: 55..114
IPR000206Ribosomal protein L7/L12TIGRFAMTIGR00855TIGR00855coord: 55..181
e-value: 3.7E-26
score: 90.0
IPR000206Ribosomal protein L7/L12HAMAPMF_00368Ribosomal_L7_L12coord: 48..182
score: 18.143
IPR000206Ribosomal protein L7/L12CDDcd00387Ribosomal_L7_L12coord: 55..181
e-value: 1.24666E-39
score: 131.894
NoneNo IPR availableGENE3D1.20.5.710coord: 53..109
e-value: 1.1E-15
score: 57.1
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeGENE3D3.30.1390.10coord: 110..182
e-value: 1.5E-22
score: 78.8
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeSUPERFAMILY54736ClpS-likecoord: 110..182

Blast
[Close]
BLAST of TCONS_00004367-protein vs. Swiss-Prot (Human)
Match: RM12 (39S ribosomal protein L12, mitochondrial OS=Homo sapiens GN=MRPL12 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 6.569e-24
Identity = 58/146 (39.73%), Postives = 83/146 (56.85%), Query Frame = 0 
Query:   51 FPKHVEDIVDSIEKLNLLEVSSLNKLLKERLGISDIPMMASAGPAAAA--------------PVEEEEQAPVEAQTEFGVKLIKFDDSKKVKLIKEIKTILTDVNLVQAKKFVESAPQVVKEKLSKEDAEKLKAQLEGVGASVEIE 182
            +P  ++ +V  I  L LLE+S LN+LLK+ L I D+ ++   G  + A              P+ +E       +T F V+L +     KVKLIKEIK  +  +NLVQAKK VES PQ +K  ++K +AEK+KA LE VG +V +E
Sbjct:   60 YPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLVPMGGVMSGAVPAAAAQEAVEEDIPIAKE-------RTHFTVRLTEAKPVDKVKLIKEIKNYIQGINLVQAKKLVESLPQEIKANVAKAEAEKIKAALEAVGGTVVLE 198
The following BLAST results are available for this feature:
BLAST of TCONS_00004367-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RM126.569e-2439.7339S ribosomal protein L12, mitochondrial OS=Homo s... [more]
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