TCONS_00004425-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00004425-protein
Unique Name	TCONS_00004425-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	558

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00004425-protein ID=TCONS_00004425-protein|Name=TCONS_00004425-protein|organism=Clytia hemisphaerica|type=polypeptide|length=558bp
XHMNLTFGGFFHGPGFAEEIFHTNDVKAQEIYKDDFVHVKVDLLQLHFKR
KKDVEPITVVNLGNCKAPWNPRTQFLTPGTSVQITVPPDVFNENNKAYKT
QILSISVSLNVPKKKKKKPGRKKKEAATEEPPAKRLRGSVTSESQVEEDT
NTTTINGFEHADEKPVFDSNEAAYSAELIVFDRYKTCLLSDGDYELLLHN
EAENNESRKNNTFESKFKNKLGPFAAFSFGPTIKFNLNWTTSAPINILPA
YKTLNQRYLEEHQAHESQDEAVEPKSMTAANKTTKPKESSLPKVYYQFLY
CHSTRQQTEAREGTSCPWCDLQCWTIYGLLRHLKSFHNRFSFVYTALKRS
HRIDVSVNETFENSLGFDGVRDIGFIDIDNAPIKRKPTSEILVGRRHVDV
EDLKEFTEADKSDMNGAFSIVHHKRSYFHSNNNQQIPDLGEFGYNSEDEG
PPDWLKEKTGDMIEDFTDVNRGEKVLMKLWNLHVLESSYVADFMVALGCE
TFVQKYGHVILNEGLTRNFLIHLNNLLEFQVISQSHIVSAIKKLSQMKKN
MKSVTNEE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_002474	XLOC_002474	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00004425	TCONS_00004425	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019135	Polycomb_protein_VEFS-Box

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 537..557
IPR019135	Polycomb protein, VEFS-Box	PFAM	PF09733	VEFS-Box	coord: 420..542 e-value: 2.9E-33 score: 114.5

Blast

[Close]

BLAST of TCONS_00004425-protein vs. Swiss-Prot (Human)
Match: SUZ12 (Polycomb protein SUZ12 OS=Homo sapiens GN=SUZ12 PE=1 SV=3)

HSP 1 Score: 276.174 bits (705), Expect = 6.547e-84
Identity = 200/588 (34.01%), Postives = 296/588 (50.34%), Query Frame = 0

Query:    2 HMNLTFGGFFHGPGFAEEIFHTNDVKAQEIYKD-DFVHVKVDLLQLHFKRKKDVE-PITVVNLGNCKAPWNPRTQFLTPGTSVQITVPPDVFNENNKAYKTQILSISVSLNVPKKKKKKPGRKKKEAATEEPPAKRLRGSVTSESQVEEDTNTTTINGFEHADEKPVFDSNEAAYSAELIVFDRYKTCLLSDGDYELLLHNEAENNESRKNNTFESKFKNK-LGPFAAFSFGPTIKFNLNWT------TSAPINILPAYKTLNQRYLEE-HQAHESQDEAVEP-------KSMTAANKTTKPKES-----SLPKVYYQFLYCHSTRQQTEAREGTSCPWCDLQCWTIYGLLRHLKSFHNRFSFVYTALKRSHRIDVSVNETFENSLGF---DGVRDIGFIDIDNAPIKRKPTSEILVGRRHVDVEDLKEFTEADKSDMNGAFSIVH-HKRSYFHSNNNQQIPDLGEFGYNSEDEGPPDWLKEKTGDMIEDFTDVNRGEKVLMKLWNLHVLESSYVADFMVALGCETFVQKYGHVILNEGLTRNFLIHLNNLLEFQVISQSHIVSAIKKLSQMKKNMK-----SVTNEE 558
            H+ LTF GFFH           ND  +     + + V ++V L+++  K++KDV  PI  V  G  + P NP      PG    + V  + F  +N      + S S+   V      +PGR++              G +  E+    D N         A  K   +  E  + A++ VFD+ +   L DG+YE+ +    E   S+K  T+E+    K L PF  FS GPT++F L WT      ++API      K L  R  E  HQ  E++  +V+P       +S+T   +T K K++        +++YQFLY ++TRQQTEAR+   CPWC L C  +Y LL+HLK  H+RF F Y    +  RIDVS+NE ++ S      D  R  GF    N P+KR P + ILV R       + EF E++  ++    +    H R YFHS+    +    E   +SEDE  P+WL+EKT   IE+F+DVN GEK +MKLWNLHV++  ++AD  +   C  FV+ YG  I+ + L RNF++HL ++ +F +IS   I  A+ KL +M++ ++     S  NEE
Sbjct:  156 HLQLTFTGFFH----------KNDKPSPNSENEQNSVTLEVLLVKVCHKKRKDVSCPIRQVPTGKKQVPLNPDLNQTKPGNFPSLAVSSNEFEPSNSHM---VKSYSLLFRV-----TRPGRRE------------FNGMINGETNENIDVNEELP-----ARRKRNREDGEKTFVAQMTVFDKNRRLQLLDGEYEVAMQEMEECPISKKRATWETILDGKRLPPFETFSQGPTLQFTLRWTGETNDKSTAPI-----AKPLATRNSESLHQ--ENKPGSVKPTQTIAVKESLTTDLQTRKEKDTPNENRQKLRIFYQFLYNNNTRQQTEARDDLHCPWCTLNCRKLYSLLKHLKLCHSRFIFNYVYHPKGARIDVSINECYDGSYAGNPQDIHRQPGFAFSRNGPVKRTPITHILVCRPKRTKASMSEFLESEDGEVEQQRTYSSGHNRLYFHSDTCLPLRP-QEMEVDSEDEKDPEWLREKTITQIEEFSDVNEGEKEVMKLWNLHVMKHGFIADNQMNHACMLFVENYGQKIIKKNLCRNFMLHLVSMHDFNLISIMSIDKAVTKLREMQQKLEKGESASPANEE 700

The following BLAST results are available for this feature:

BLAST of TCONS_00004425-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00004425-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SUZ12	6.547e-84	34.01	Polycomb protein SUZ12 OS=Homo sapiens GN=SUZ12 PE...	[more]

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TCONS_00004425-protein (polypeptide) - C. hemisphaerica