TCONS_00004473-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00004473-protein
Unique Name	TCONS_00004473-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	690

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00004473-protein ID=TCONS_00004473-protein|Name=TCONS_00004473-protein|organism=Clytia hemisphaerica|type=polypeptide|length=690bp
MKKPTKISKAGSKVGEKKAVGTASNQNLKSPSKGDVNKNKKKKEDDESGQ
QGYDELDEWMQPKQLVKPEDQLVLTEQELKEEFTRILTANNPHAPSNIVR
FNFKEQAYKQIPTVDQLAVHFSIDGNMLHKDSEEARRQLMAQSGEDEEEP
EEEDEDNENEDKNNEDTTDREEATASPTGKAPPQKLTNQFNFCERASQTY
NNPYRERGTMTEPPPRVSFSANANQWEIYDAYVEDLQRQEREKEKENKKS
SKKDDEKKKKNVAVEVTGDDIKRVGRASKIVERMVNQNTYDAIAHDFKYW
EDLSDEYRDNEGTVLPLWKFYYERSKRMTVTAISWSPKYQDLFAVGHGSY
DFLKQTNGMICFYSLKNPSFPEHVYVTNRGVMCLDIHPTHSHLIVVGFYD
GSVAVFSLEDKTSKPVYQSTAKTGKHTDPVWEVKWQKDNLDGNLNFYSVA
SDGRVVAWTIIKSDLHFTDVIQLKMDETPANGPEGTQMNALGCGTAIDFH
RTIDYLFLVGTEEGKIHKCSKAYSSKYLSSFDAHHMAVYAVRWNHFHPKI
FISCSADWSVKIWDHTCPDPIFTFDLGSAVGDVAWAPYASTVFAAVTADG
KVVVYDLSINKYEPVCDQFIVQKGKTKLTHVSFNPLHPIVIIGDDRGYVT
SVKLSPNLRKALHPKEKGKGPENEVAKFDKLLSLVREPSE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_002519	XLOC_002519	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00004473	TCONS_00004473	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_repeat
IPR015943	WD40/YVTN_repeat-like_dom
IPR017986	WD40_repeat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 229..256
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 136..187
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 238..261
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 412..459 e-value: 11.0 score: 10.5 coord: 524..564 e-value: 7.2E-8 score: 42.1 coord: 368..407 e-value: 0.14 score: 21.2 coord: 567..606 e-value: 0.89 score: 17.3
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 527..564 e-value: 0.008 score: 16.9
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 531..564 score: 10.107
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 125..675 e-value: 1.3E-41 score: 142.0
IPR017986	WD40-repeat-containing domain	PROSITE	PS50294	WD_REPEATS_REGION	coord: 531..573 score: 9.388
IPR017986	WD40-repeat-containing domain	SUPERFAMILY	50978	WD40 repeat-like	coord: 329..651

Blast

[Close]

BLAST of TCONS_00004473-protein vs. Swiss-Prot (Human)
Match: DNAI1 (Dynein intermediate chain 1, axonemal OS=Homo sapiens GN=DNAI1 PE=1 SV=1)

HSP 1 Score: 768.844 bits (1984), Expect = 0.000e+0
Identity = 391/687 (56.91%), Postives = 513/687 (74.67%), Query Frame = 0

Query:   29 KSPSKGDVNKNK-KKKEDDESGQQGYDELDEWMQPKQLVKPEDQLVLTEQELKEEFTRILTANNPHAPSNIVRFNFKEQAYKQIPTVDQLAVHFSIDGNMLHKDSEEARRQ-----LMAQSGEDEEEPEEEDEDNENEDKNNEDT-----TDREEATASP--------TGKAPPQ-KLTNQFNFCERASQTYNNPYRERGTMTEPPPRVSFSANANQWEIYDAYVEDLQRQEREKEKENKKS---SKKDDEKKKKNVAVEVTGDDIKRVGRASKIVERMVNQNTYDAIAHDFKYWEDLSDEYRDNEGTVLPLWKFYYERSKRMTVTAISWSPKYQDLFAVGHGSYDFLKQTNGMICFYSLKNPSFPEHVYVTNRGVMCLDIHPTHSHLIVVGFYDGSVAVFSLEDKTSKPVYQSTAKTGKHTDPVWEVKWQKDNLDGNLNFYSVASDGRVVAWTIIKSDLHFTDVIQLKMDETPANGPEGTQMNALGCGTAIDFHRTIDYLFLVGTEEGKIHKCSKAYSSKYLSSFDAHHMAVYAVRWNHFHPKIFISCSADWSVKIWDHTCPDPIFTFDLGSAVGDVAWAPYASTVFAAVTADGKVVVYDLSINKYEPVCDQFIVQKGKTKLTHVSFNPLHPIVIIGDDRGYVTSVKLSPNLRKALHPKEKG-----KGPENEVAKFDKLLSLVRE 687
            K P K  ++  +  +K D++SG +  +  DEW Q K  V+P DQL LT+ ELKEEFTRILTANNPHAP NIVR++FKE  YK I  V+QLAVH++  GN++ KDS+E RRQ     L+A S E  +   E     E+E+    +T     TD   A A+         T K P + KLTNQFNF ERASQTYNNP R+R   TEPPPR +FSA ANQWEIYDAYVE+L++QE+ KEKE  K+    K      +K  ++E   DD+ ++ +A+KI+ERMVNQNTYD IA DFKY++D +DEYRD  GT+LPLWKF  +++KR++VTA+ W+PKY+DLFAVG+GSYDF+KQ+ GM+  YSLKNPSFPE+++ +N GVMCLDIH  H +L+ VG YDG+VA+++L+   S+P + S+AK+GKH+DPVW+VKWQKD++D NLNF+SV+SDGR+V+WT++K  L   DVI+LK++ +    PEG Q++ +GCGTA DFH+ IDY+FLVGTEEGKI+KCSK+YSS++L ++DAH+M+V  V WN +H K+F+SCS+DW+VKIWDHT   P+F +DL SAVGDVAWAPY+STVFAAVT DGK  ++DL+INKYE +C+Q +  K K +LTHV FN +HPI+I+GDDRG++ S+KLSPNLRK   PKEK      KGP  E+AK DKLL+LVRE
Sbjct:   11 KQPHKQSISIGRGTRKRDEDSGTEVGEGTDEWAQSKATVRPPDQLELTDAELKEEFTRILTANNPHAPQNIVRYSFKEGTYKPIGFVNQLAVHYTQVGNLIPKDSDEGRRQHYRDELVAGSQESVKVISETGNLEEDEEPKELETEPGSQTDVPAAGAAEKVTEEELMTPKQPKERKLTNQFNFSERASQTYNNPVRDRECQTEPPPRTNFSATANQWEIYDAYVEELEKQEKTKEKEKAKTPVAKKSGKMAMRKLTSMESQTDDLIKLSQAAKIMERMVNQNTYDDIAQDFKYYDDAADEYRDQVGTLLPLWKFQNDKAKRLSVTALCWNPKYRDLFAVGYGSYDFMKQSRGMLLLYSLKNPSFPEYMFSSNSGVMCLDIHVDHPYLVAVGHYDGNVAIYNLKKPHSQPSFCSSAKSGKHSDPVWQVKWQKDDMDQNLNFFSVSSDGRIVSWTLVKRKLVHIDVIKLKVEGSTTEVPEGLQLHPVGCGTAFDFHKEIDYMFLVGTEEGKIYKCSKSYSSQFLDTYDAHNMSVDTVSWNPYHTKVFMSCSSDWTVKIWDHTIKTPMFIYDLNSAVGDVAWAPYSSTVFAAVTTDGKAHIFDLAINKYEAICNQPVAAK-KNRLTHVQFNLIHPIIIVGDDRGHIISLKLSPNLRKM--PKEKKGQEVQKGPAVEIAKLDKLLNLVRE 694

The following BLAST results are available for this feature:

BLAST of TCONS_00004473-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00004473-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DNAI1	0.000e+0	56.91	Dynein intermediate chain 1, axonemal OS=Homo sapi...	[more]

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TCONS_00004473-protein (polypeptide) - C. hemisphaerica