TCONS_00004509-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00004509-protein
Unique Name	TCONS_00004509-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1365

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00004509-protein ID=TCONS_00004509-protein|Name=TCONS_00004509-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1365bp
MKDRSINGEISDVSTQHTIYLQAVRKLIQDGQNFEDDIFNLVDVLSQVLC
DQIPDNRKLAMDLLCELIPSYRGDDLDTNIGLLFPQLLQNLLHHQLNVKK
SVLQVLHVYYRHTKDISHGLQHLIDHGINTDLKAVRNEVLVSIPALMSTG
FAASQLDRLVISIINCLNLIGNGESILPVTLCLEHLRNIIGENEFDIILD
QLDPSLSNLYRAVVQNPTYTWEGSQKQTSNQMADIIPNEILNNLDSEKSW
QTRSDAINDLFTFVSQTMDNNSLLYFCRRILDYISLLVDDANFNVALVSM
NILHQIIIRTSEQVKVHMDLIIQILLKKLSDGKLIMRKINLRIALSLMHS
LSPMVFLKSIFPILKNKSSRVREEILNMIIAALLSFPSSEFNLVLLPDDI
AFTLLDNRKRVRHASLECFAILAQQLGPGNLSPLVSAVDILERKNKNAEG
LLLAVQSRLGRKMLPKINENELVQYAVKLPTSKSTDGQLKPDVAWIISGM
SVSGYESSRSEMSDYSESCDRRILSAGRNKLPWQENQKLSTRKNAASAPV
RAGGLSQSRSPEEPSPVICDSWVSDPANEKRVPANGSNMPVSYFELYKNK
MKKLKEAGLRADVHTVNMELNLGDRSSSKEDILSPLEDDSLDDSFTEAKT
SPIPVKPTLARSASKKRKDRALTDRKTSSDDMNALRSNKDLVNLNNANLA
HTLPKMKGGLSHLISETTSPTNSPSQNPPFPMRRATIHRTPSGNARSSPR
MAELSNLTRLKPLSKSSPETHPLNKVHLQNGTGSNYAEDQSYDRRNSNNK
DETRRQARRRNSIDRRYADDVQRGSYLRNGEEHQRNDDIAYSRDFFAGPS
GYVPHENNIASSKENQPGTPKLAKSAQEKLRKLKEEQQRLSANKHRNGLS
SGLNGTFPHKLHLELNNNHSDQVIERHSKQHFQEPPFAKKSSKLRHNNSF
TSSPSPTSPQRPYQGGNANEFIKSPLSPLSDRLTGNPDDRPIKPAKQQYW
GNRNGNHSPHEQPSQINGDERAIKPAKHQHWGEASAESPGSLDGVDGLQI
EGHKPKVQKVQKVQPKFGTSPKLKRKTNRKNSPRQQAEDKENLIETSPKP
EANKTDLQNMKPFDAVTAALRMLNSSPEEWESKIDGLDMTLELLKKEGDD
ICEGHAVVTAILNQVKNLRSQITRKALNCIGQAFVHAPRTCEPDLEAILK
TVLPKAGDTNQFIKSDTEQAIELLVENVNPYKAMPALVSCGVAHLNGHVR
KISSKALADISERIGYAKFCSQRGNLMAAAKLAQDQHPESRYHGRRIMLQ
LLEYPELMDTLRRQLKPANFKAVHDIIENLKLRGLEPASGSATLRRSMRG
SAPYNSPSTTRSRKR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_002536	XLOC_002536	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00004509	TCONS_00004509	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR034085	TOG
IPR011989	ARM-like
IPR024395	CLASP_N_dom
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 873..893
None	No IPR available	COILS	Coil	Coil	coord: 438..458
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 936..1106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 530..566
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1340..1365
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 625..687
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 712..835
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 852..879
IPR034085	TOG domain	SMART	SM01349	TOG_3	coord: 222..454 e-value: 1.0E-24 score: 98.1 coord: 1106..1338 e-value: 0.0025 score: 20.7
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 9..516 e-value: 2.9E-22 score: 78.2
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 791..1348 e-value: 6.6E-12 score: 44.0
IPR024395	CLASP N-terminal domain	PFAM	PF12348	CLASP_N	coord: 240..423 e-value: 1.2E-6 score: 28.2
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 233..436 coord: 1159..1305
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 19..208

Blast

[Close]

BLAST of TCONS_00004509-protein vs. Swiss-Prot (Human)
Match: TGRM1 (TOG array regulator of axonemal microtubules protein 1 OS=Homo sapiens GN=TOGARAM1 PE=1 SV=4)

HSP 1 Score: 215.312 bits (547), Expect = 2.964e-56
Identity = 166/541 (30.68%), Postives = 275/541 (50.83%), Query Frame = 0

Query:   41 LVDVLSQVLCDQIPDNRKLAMDLLCELIPSYRGD----DLDTNIGL-LFPQLLQNLLHHQLNVKKSVLQVLHVYYRHTKDISHGLQHLIDHGINTDLKAVRNEVLVSIPALMSTGFAASQLDRLVISIINCLNLIGNGESILPVTLCLEHLRNI---IGENEFDIILDQLDPSLSNLYRAVV------QNPTY-TWEGS-----------QKQTSNQMADIIPNEILNNLDSEKSWQTRSDAINDL----FTFVSQTMDNNSLLYFCRRILDYISLLVDDANFNVALVSMNILHQIIIRTSEQVKVHMDLIIQILLKKLSDGKLIMRKINLRIALSLMHSLSPMVFLKSIFPILKNKSSRVREEILNMIIAALLSFPSSEFNLVLLPDDIAFTLLDNRKRVRHASLECFAILAQQLGPGNLSPLVSAVDILERKNKNAEGLLLAVQSRLGRKMLPKINENELVQYAVKLPTS---KSTDGQLKPDVAWIISGMSVSGY-----ESSRSEMSDYSES----CDRRILSA--GRNKLPWQENQ 537
            L   L +VL +   D ++L + LL +++   RG      L+    L L PQL+ +L      ++K  LQ+LH+  + +      L+ LI  G+ +    +R    + +P L++T      LD L   II+    +G+ E+          L+ I   +G++ F   + +L  +L   Y   +      Q P Y   E S               SN    IIP E+ + L  ++ ++ R+ A+ +L      F   +  ++SL+ F   + +    L+DD+NF V   ++ +LH ++IR  EQV+  +  +I   +K L+D KL++++  ++I L LM  + P   L  +   LK+K SRVREE++N+ I +LL++PS +F+L  L  D+A  L+D+++RVR A+LE FA+LA  +G G  S L  AVD +E ++ N +G++ AVQ+RL RK LP++ E   V+YAV +P+S   +S       D  W+++G           +  R  M  Y       C RR+LSA  G+NKLPW+  Q
Sbjct:  136 LYRALGRVLVEGGSDEKRLCLQLLSDVL---RGQGEAGQLEEAFSLALLPQLVVSLREENPALRKDALQILHICLKRSP--GEVLRTLIQQGLESTDARLRASTALLLPILLTTEDLLLGLD-LTEVIISLARKLGDQETEEESETAFSALQQIGERLGQDRFQSYISRLPSALRRHYNRRLESQFGSQVPYYLELEASGFPEDPLPCAVTLSNSNLKFGIIPQELHSRLLDQEDYKNRTQAVEELKQVLGKFNPSSTPHSSLVGFISLLYN----LLDDSNFKVVHGTLEVLHLLVIRLGEQVQQFLGPVIAASVKVLADNKLVIKQEYMKIFLKLMKEVGPQQVLCLLLEHLKHKHSRVREEVVNICICSLLTYPSEDFDLPKLSFDLAPALVDSKRRVRQAALEAFAVLASSMGSGKTSILFKAVDTVELQD-NGDGVMNAVQARLARKTLPRLTEQGFVEYAVLMPSSAGGRSNHLAHGADTDWLLAGNRTQSAHCHCGDHVRDSMHIYGSYSPTICTRRVLSAGKGKNKLPWENEQ 665

HSP 2 Score: 97.8265 bits (242), Expect = 2.717e-20
Identity = 74/282 (26.24%), Postives = 132/282 (46.81%), Query Frame = 0

Query: 1090 KENLIETSPKPEANKTDLQNMKPFD----AVTAALRMLNSSPEEWESKIDGLDMTLELLKKEGDDI-CEGHAVVTAILNQVKNLRSQITRKALNCIGQAFVHAPRTCEPDLEAILKTVLPKAGDTNQFIKSDTEQAIELLVENVNPYKAMPALVSCGVAHLNGHVRKISSKALADISERIGYAKFCSQRGNLMAAAKLAQDQHPESRYHGRRIMLQLLEYPELMDTLRRQLKPANFKAVHDIIENLKLRGLEPA---SGSATLRRSMRGSAPYNSPSTTRSR 1363
            KE +   +  PE    DL  ++PF     A+T ALR+L  + E+WE KI+GL+    L     + +  + H    A++ +VKNLRS ++R A+ C+   F +  ++ + +L+  +K +L KAG++N FI+ D ++A+  +V NV P +A+ +L++ G                                                 RY+GR+++  ++ +P     L + +   +   + D + NL+ +GL      + SA  RRS  GS   N+ S++ SR
Sbjct: 1231 KERMPSVTHSPEI--MDLSELRPFSKPEIALTEALRLL--ADEDWEKKIEGLNFIRCLAAFHSEILNTKLHETNFAVVQEVKNLRSGVSRAAVVCLSDLFTYLKKSMDQELDTTVKVLLHKAGESNTFIREDVDKALRAMVNNVTPARAVVSLINGG------------------------------------------------QRYYGRKMLFFMMCHPNFEKMLEKYVPSKDLPYIKDSVRNLQQKGLGEIPLDTPSAKGRRSHTGSVG-NTRSSSVSR 1459

The following BLAST results are available for this feature:

BLAST of TCONS_00004509-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00004509-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TGRM1	2.964e-56	30.68	TOG array regulator of axonemal microtubules prote...	[more]

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TCONS_00004509-protein (polypeptide) - C. hemisphaerica