TCONS_00004572-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004572-protein
Unique NameTCONS_00004572-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length650

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004572-protein ID=TCONS_00004572-protein|Name=TCONS_00004572-protein|organism=Clytia hemisphaerica|type=polypeptide|length=650bp
MFRICRNKFIFQSTNQLVAKIMKRSSIGSPTSPLRSPRNGLQTVGTVENV
PDFHQQAIQQARPYQVEILEEAIKDNTIVCLGTGTGKTFISVMLIRDKQD
QIKGKFEDGGKRTFFLVNTVPLAEQQAKAVSQNTSLKVKHYTGDMGVDFW
DQDTWVKEFNENDVLVMTAQILVNILTHGFFTRENINLLIMDECHNATKK
HPYVRVMEFLPVTGGPHIMGLTASIINEKYKKSPDKDSIRDFLDDRMKIL
ETTMRSKCITCSDREATSKYATKPVESVLMFSSKYKINDFDKMNLFIFKL
KREFQEASEMFDLQKKQAKVDKSLFRNVSYFDVINRTSRLGFKDACAIAS
DAVKLGLQILETLGPISTFDAIEILSGQLEKHKKRFSTENGKVLRDCSNV
FNKFETGYREAVIKEGFGEPDRVIPLQPFITNKAHVFLTDVLLQEKLNFQ
RQNKELHAIMFVQRRCTAIILSQLIQRMVKSDSNTYQGISSEYVLGHGFD
ENIRLADSFMKSTEQSKILTRFKAAEFNILVATSVVEEGLDVRKCNLVVR
FDGIFNYREYAQSKGRARAKDSKFIVMASEEDYEDTSRQLEVMQKIESVL
FDKCQDRELPTEDEIREQMFDEIDEMVNTIFSEDGNXNVNQNITKHNVDF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002566XLOC_002566Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004572TCONS_00004572Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014001Helicase_ATP-bd
IPR001650Helicase_C
IPR006935Helicase/UvrB_N
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0003677DNA binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0016787 hydrolase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 57..250
e-value: 1.8E-17
score: 74.0
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 68..243
score: 18.922
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 493..570
e-value: 1.1E-11
score: 54.9
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 458..569
e-value: 5.9E-17
score: 61.9
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 442..623
score: 13.751
NoneNo IPR availableGENE3D3.40.50.300coord: 429..620
e-value: 1.2E-19
score: 69.9
NoneNo IPR availableGENE3D3.40.50.300coord: 47..247
e-value: 8.1E-26
score: 90.1
NoneNo IPR availableCDDcd00079HELICccoord: 438..567
e-value: 1.18402E-9
score: 55.3217
NoneNo IPR availableCDDcd00046DEXDccoord: 76..225
e-value: 8.88254E-15
score: 71.2144
IPR006935Helicase/UvrB, N-terminalPFAMPF04851ResIIIcoord: 61..224
e-value: 3.5E-15
score: 56.3
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 110..254
coord: 438..586

Blast
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BLAST of TCONS_00004572-protein vs. Swiss-Prot (Human)
Match: DICER (Endoribonuclease Dicer OS=Homo sapiens GN=DICER1 PE=1 SV=3)

HSP 1 Score: 169.088 bits (427), Expect = 1.174e-43
Identity = 96/253 (37.94%), Postives = 145/253 (57.31%), Query Frame = 0 
Query:   32 SPLRSPRNGLQTVGTVENVPDFHQQAIQQ----ARPYQVEILEEAIKDNTIVCLGTGTGKTFISVMLIRDKQDQIKGKFEDGGKRTFFLVNTVPLAEQQAKAVSQNTSLKVKHYTGDMGVDFWDQDTWVKEFNENDVLVMTAQILVNILTHGFFTRENINLLIMDECHNATKKHPYVRVMEFLP-VTGGPHIMGLTASIINEKYKKSPDKDSIRDFLDDRMKILETTMRSKCITCSDREATSKYATKPVESVL 279
            +P  SP      +G    +P + Q+AI       R YQVE+LE A+  NTIVCL TG+GKTFI+V+L ++   QI+G F   GKRT FLVN+     QQ  AV  ++ LKV  Y+       W ++ W +EF ++ VL+MT  + +N+L +G+ +  +INLL+ DECH A   HPY  +M+        P I+GLTASI+N K    P++      L+++++ LE  ++S   T +D     +Y ++P E V+
Sbjct:   18 TPASSP------MGPFFGLP-WQQEAIHDNIYTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFSRNGKRTVFLVNSANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWNQEFTKHQVLIMTCYVALNVLKNGYLSLSDINLLVFDECHLAILDHPYREIMKLCENCPSCPRILGLTASILNGKC--DPEE------LEEKIQKLEKILKSNAETATDLVVLDRYTSQPCEIVV 255

HSP 2 Score: 120.168 bits (300), Expect = 6.603e-28
Identity = 66/153 (43.14%), Postives = 96/153 (62.75%), Query Frame = 0 
Query:  456 LHAIMFVQRRCTAIILSQLIQRMVKSDSNTYQGISSEYVLGHGFDEN----IRLADSFMKSTEQSKILTRFKAAEFNILVATSVVEEGLDVRKCNLVVRFDGIFNYREYAQSKGRARAKDSKFIVMASEEDYEDTSRQLEVMQKIESVLFDKC 604
            L  I+FV+RR TA++L++LI+   K D      ISS ++ GHG  +N     ++   F K   Q ++L +F+A E N+L+ATS+VEEG+D+ KCNLVVRFD    YR Y QSKGRARA  S +I++A  +  +     L+  + IE +L +KC
Sbjct:  442 LCGIIFVERRYTAVVLNRLIKEAGKQDPEL-AYISSNFITGHGIGKNQPRNKQMEAEFRK---QEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRNKC 590
The following BLAST results are available for this feature:
BLAST of TCONS_00004572-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DICER1.174e-4337.94Endoribonuclease Dicer OS=Homo sapiens GN=DICER1 P... [more]
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