TCONS_00004584-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004584-protein
Unique NameTCONS_00004584-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length225

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004584-protein ID=TCONS_00004584-protein|Name=TCONS_00004584-protein|organism=Clytia hemisphaerica|type=polypeptide|length=225bp
RLKQPKIIKVTPEKPNIKLRIIKVKTVEDVMDSALLCDLVDQLKTDLKTC
DKTIIYCHSYPACGDVYSKIKGHFPCGFDLTLLVEIYHGSTEDEIQQEIL
DDFSNNNSSTRIVIATNALGVGVNIRNIRNIVHWGVPSDIEGYVQEIGRA
GRDEKDSSATLFYRGNDLTHCKDKDMVTYIKNEQKECRRKLLMSFFKSEH
STSVEKQLYIVFTKFNGLILDSTML
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002578XLOC_002578Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004584TCONS_00004584Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR027417P-loop_NTPase
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 64..154
e-value: 1.4E-17
score: 74.4
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 45..152
e-value: 2.7E-17
score: 63.0
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 42..212
score: 16.549
NoneNo IPR availableGENE3D3.40.50.300coord: 14..210
e-value: 7.9E-30
score: 103.3
NoneNo IPR availableCDDcd00079HELICccoord: 23..162
e-value: 5.83674E-18
score: 75.7372
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 11..200

Blast
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BLAST of TCONS_00004584-protein vs. Swiss-Prot (Human)
Match: WRN (Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.080e-18
Identity = 64/221 (28.96%), Postives = 107/221 (48.42%), Query Frame = 0 
Query:    2 LKQPKIIKVTPEKPNIKLRIIKVKTVEDVMDSALLCDLVDQLKTDLKTCDKTIIYCHSYPACGDVYSKIK------GHFPCGFDLTLLVEIYHGSTEDEIQQEILDDFSNNNSSTRIVIATNALGVGVNIRNIRNIVHWGVPSDIEGYVQEIGRAGRDEKDSSATLFYRGNDLTHCKDKDMVTYIKNEQ-KECRRKLLMSFFKSEHSTSVEKQLYIVFTKF 215
            L+ P+I     ++PN+ L + + KT   + D   L   + +  +  +    TIIYC S      V  +++      G +  G   +   +I+H    DEIQ                VIAT A G+G+N  +IR ++H+G P D+E Y QEIGRAGRD   SS  + +   D+    ++ ++T I+NE+ +  + K++    K  HS+   +Q  I+ + F
Sbjct:  720 LRNPQITCTGFDRPNLYLEV-RRKTGNILQD---LQPFLVKTSSHWEFEGPTIIYCPSRKMTQQVTGELRKLNLSCGTYHAGMSFSTRKDIHHRFVRDEIQ---------------CVIATIAFGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINL--NRHLLTEIRNEKFRLYKLKMMAKMEKYLHSSRCRRQ--IILSHF 917
The following BLAST results are available for this feature:
BLAST of TCONS_00004584-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WRN1.080e-1828.96Werner syndrome ATP-dependent helicase OS=Homo sap... [more]
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