TCONS_00004616-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004616-protein
Unique NameTCONS_00004616-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length180

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004616-protein ID=TCONS_00004616-protein|Name=TCONS_00004616-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
MSTSKVRGPIQKSLKYVPNVKAVTTRAKMLKVPHKHPSNDTFEPFWKFGR
YVCQLKRLTINYCSDNPGSRGIRRFLDLEVDQFIENNPEVAVYLQERRGQ
SPRLVANYLNGNSRIIQIPNNDDIAIREWLERLRNESGRQWRSERLHQPW
LSDNPSIQGTWSPFLNKPPVDINDEHYVDK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002603XLOC_002603Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004616TCONS_00004616Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007741Ribosome/NADH_DH
IPR012336Thioredoxin-like_fold
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007741Ribosomal protein/NADH dehydrogenase domainSMARTSM00916L51_S25_CI_B8_2coord: 64..137
e-value: 6.4E-12
score: 55.6
NoneNo IPR availableGENE3D3.40.30.10coord: 54..138
e-value: 2.3E-18
score: 65.6
IPR012336Thioredoxin-like foldSUPERFAMILY52833Thioredoxin-likecoord: 54..138

Blast
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BLAST of TCONS_00004616-protein vs. Swiss-Prot (Human)
Match: RM43 (39S ribosomal protein L43, mitochondrial OS=Homo sapiens GN=MRPL43 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.460e-24
Identity = 51/121 (42.15%), Postives = 68/121 (56.20%), Query Frame = 0 
Query:   48 FGRYVCQLKRLTINYCSDNPGSRGIRRFLDLEVDQFIENNPEVAVYLQERRGQSPRLVANYLNGNSRIIQIPNNDDIAIREWLERLRNESGRQWRSERLHQPWLSDNPSIQGTWSPFLNKP 168
             GRYV QL+RL+ +   D   SRG R F++ EV  F   NP V +Y+  R    PR+VA YLNG  R   I       I   +++L ++SG      R+ +P+ +DNPSIQG W PF NKP
Sbjct:   19 LGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPGVVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSG--LDVIRIRKPFHTDNPSIQGQWHPFTNKP 137
The following BLAST results are available for this feature:
BLAST of TCONS_00004616-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RM438.460e-2442.1539S ribosomal protein L43, mitochondrial OS=Homo s... [more]
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