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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004616 ID=TCONS_00004616|Name=TCONS_00004616|organism=Clytia hemisphaerica|type=transcript|length=1497bp
ACTATTGACTTGGTTCTCGTAGATCAAAAACATGTTCAATTGTTTTCAAT
CTTTTCTTGAATTCTTCTGATacataatttgttgaaaatcgTTGCAATTT
AGAAGTATTTAAACATAGATTAATCTTCAAGAATCCCTTACTAACAGACA
AGCTAAAAGAATACATTAAAATTAACTACTGTAGGTAGTTGGTGGTGGAA
ACTGTTCTGTTTGTCCGTCATTTTGAGCTCTTTTTCCGCCATgtgctttt
ttgttttgatattttgatagaTGACTATTAGATAAGGCGCTTTAAAAAAG
CATAGCAGATATATATGTAGGGGAGGGCTCCCGAATTTTCTGTCAATAAA
CTCTTATGCTTTTTAGGTAAACCAACAACCATAGATTGAACTCACAAGAA
AATTTTTAGTGTGAGAAGCGGACGTCTTAAATTTTAGCTGttaCGAAGAA
TGAGTACCAGTAAAGTAAGAGGGCCCATTCAGAAAAGCTTGAAATATGTT
CCAAATGTCAAGGCAGTAACAACTCGTGCAAAGATGCTCAAAGTTCCACA
TAAACATCCTTCAAATGATACATTCGAGCCTTTTTGGAAATTCGGAAGAT
ATGTTTGTCAGTTAAAGAGATTGACAATAAACTATTGTTCTGATAATCCA
GGGAGTAGAGGCATTAGgCGGTTTCTCGATTTGGAAGTTGACCAATTTAT
AGAAAACAATCCAGAAGTTGCTGTTTACCTCCAAGAAAGAAGAGGACAAT
CACCGAGGCTTGTGGCAAACTACTTGAATGGAAACTCTCGTATCATACAG
ATCCCAAATAACGACGACATTGCCATTAGAGAATGGTTAGAACGTTTACG
AAACGAAAGTGGACGACAATGGAGAAGCGAGAGATTACATCAACCTTGGT
TAAGTGATAATCCATCTATACAAGGAACGTGGTCACCTTTCCTTAACAAA
CCACCTGTTGATATTAACGATGAACATTATGTTGATAAGTGAGACCAAGg
atattctttctttttgtatttttagattttttatacATATAGTAAGCTGA
AATGTAAATATGATTGAttgatacttttgaaaattgatatcgaactataa
aattttgaaatccagGTTACAATTTTTGAACCCACAAAGAatgctttttc
ggatttttttttagtttccgATGGGAAAAGATGACGTTTAACTCTTTTTG
GTCCAGGCTTTTTTGAAGAATAATAATCCGAGGAAggatacagggtgtcc
cgaaaaaaagccCTGTGTTAGACCACTCATTCTATGGTAGAAAGTTTTTT
GTGTATAactcaaaaatcgaaatattcaatgaaataaAGTCGGAAATAAA
GTGGAAGCTAAAATCgctattttcgccattttcgcccaaactctaaattt
tgaaaaatgttaaattaCACAAAAACCTCAATATTATTTCGACCAAGATT
GTGGGAAAGATTTTTAATTTCTGTCATTATATAATAATGAATCTGAG Run BLAST on NCBI protein sequence of TCONS_00004616-protein >TCONS_00004616-protein ID=TCONS_00004616-protein|Name=TCONS_00004616-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
MSTSKVRGPIQKSLKYVPNVKAVTTRAKMLKVPHKHPSNDTFEPFWKFGR
YVCQLKRLTINYCSDNPGSRGIRRFLDLEVDQFIENNPEVAVYLQERRGQ
SPRLVANYLNGNSRIIQIPNNDDIAIREWLERLRNESGRQWRSERLHQPW
LSDNPSIQGTWSPFLNKPPVDINDEHYVDK Run BLAST on NCBI transcript from alignment at sc0000047:190223..198984+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004616 ID=TCONS_00004616|Name=TCONS_00004616|organism=Clytia hemisphaerica|type=transcript|length=8762bp|location=Sequence derived from alignment at sc0000047:190223..198984+ (Clytia hemisphaerica)
ACTATTGACTTGGTTCTCGTAGATCAAAAACATGTTCAATTGTTTTCAAT
CTTTTCTTGAATTCTTCTGATacataatttgttgaaaatcgTTGCAATTT
AGAAGTATTTAAACATAGATTAATCTTCAAGAATCCCTTACTAACAGACA
AGCTAAAAGAATACATTAAAATTAACTACTGTAGGTAGTTGGTGGTGGAA
ACTGTTCTGTTTGTCCGTCATTTTGAGCTCTTTTTCCGCCATgtgctttt
ttgttttgatattttgatagaTGACTATTAGATAAGGCGCTTTAAAAAAG
CATAGCAGATATATATGTAGGGGAGGGCTCCCGAATTTTCTGTCAATAAA
CTCTTATGCTTTTTAGGTAAACCAACAACCATAGATTGAACTCACAAGAA
AATTTTTAGTGTGAGAAGCGGACGTCTTAAATTTTAGCTGGTAAGTGTAC
AATTTTATTTGGTTTCATTTCGTTTTATTTCTAACctcaaaataactttt
taaagtttttacttttttcatttatagttaCGAAGAATGAGTACCAGTAA
AGTAAGAGGGCCCATTCAGAAAAGCTTGAAATATGTTCCAAATGTCAAGG
CAGTAACAACTCGTGCAAAGATGCTCAAAGTTCCACATAAACATCCTTCA
AATGATACATTCGAGCCTTTTTGGAAATTCGGAAGATATGTTTGTCAGTT
AAAGAGATTGACAATAAACTATTGTTCTGATAATCCAGGGAGTAGAGGCA
TTAGGTGAGTCCAAGCAATTCGCTATTCCATTTTAGCTAGCTAGAAGATA
GAAGGGAGGGAGGgataaaaccagaaaaatataAGCAATGTCAATTTTGA
AGAGGTAGCGTCCTTTTGAATGTTGAATAAGATCTTACACTAAAAGATTC
TTCTGACCTTTCTGGAAATTTTCTGCTAATTTTACGGGATATATatatac
tgtaagttggtctagtgttgacatccctcttctaatttcagGACCCTTCC
TTTCTGGAGCAgctaaaaaacactatttttctctccgGAAAGTTCCAGAG
CTCTTCCGGTGCTTTCGGAGCAGGTGATTTTTAACACGTTCTTAAAACCG
AGTGATATCGTAATTATATCGCAGATATCTCCAGATGATAttaatcgaac
ggaatcgacgatcgaaccagtcgaaccaaattgaacgcaatcgaccgatt
gaaattcaattgtcgaacgcaatcgaatctcaatcaaatattaccgcaat
tttcagattcgattgatattcgaattgcgttcgattgatgttcgattgtc
gatagaccttttttcaaagaggacgtcctgttgaataattatgtagtcca
gccataaaaacaatgatagagccatgcataatttatgtatcatgcatatt
gtaataattatgcatggttttatcattgtttttctgctggactacttaat
tattcaacagggtggcctctttgaaaaaggtctattcattgacccccaga
ttgttcatcgcataatttctacggaaaatcgaaagtaatttcattcggct
tgtgatgtttgagagcttggatgttgggaagctgcaagaataaagccaga
cgatctcaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNgtcgaatattacccagaattttgacgttcgattg
agattcgattgcgttcgacaatcgaatttcaatcggtcgattgcgttcga
tttggttcgattggttcgatcatcgattccgttcgattgagatcgtctgg
atattTTGCTCAGAAACAACGGAAGTGCACCGGAACGTTCCAGAGTTCCG
GTGCAGACCATGTCAATCAGTGAAAAACGTGCTCCAGAACACCCATGGCA
TGAACCCCCCCAGCCCGCAGGGGGGGGGctacaaccaaaatcttccggaa
aaaggctgggggctggattttttttcaatttcagggggtacctatgacct
ctgggggtatctaacttttatgcagtaaggtctgggggcttgagaactat
attttatcttgcttttatctaataactatcattattctttttaattgtaa
aaatatacaatttttttcatttcttgacatatactcaaatcacagggggt
accaatcacagggggtacctactaacgtctgttgtttgggggtacctaaa
attcagggaaTACCTATTTTCTaagggggtacctaaacccctggtccatg
ccatgaACACCTGAAGTgccggtttgtgtaatttacgatgcgcgatccaa
cgattcacgatgcacgatgcacgatccatgcatgatttatgtcgatttat
gttaattattctaattatgtatgaataagttttcataatgctagctacac
aataacgaaaaaaaaataaaaaaaaaattaaaagaagaaggggaaataat
ttatcataatcagaatgattaaaataacttatatcttctgtgtagaaaaa
ccaaaaattgatagcgagagaaagaaaatgttcgtCGCATACCTCActcg
tttttaaaatgaaagaaaaggccttgacgtcatagaaaagttttcacgcg
aaaaatttattaaaacacTTAATTCCCTTggacttggagagggaatgttt
gtaaacattatCACAGGAGTATACCTTCAATCGATAAACAAATCAGACTA
TATAGAAACATATAAAAGCCAACTATCATCTATCACTGGTATTTTGAACC
AATTTTCCGCTACATCTGAATCGATTATCCTTGGTGACTTTCAAAGCTGC
CCGAATGAACCTATCACACAAAGGACTACACCACCCAATGCTCTTTCACC
TTACCTATCAGGATTTATTGCCGATAATNCCTATCACACAAAGGACTAAA
CCAACCAATGCTCTTTCACCTTACCTATCAGGATTTATTGCCGATAATAA
CCTTGTTCCAATAGACATCACCCACGGTCATGGTCCAAACTACACATACC
ACAATATTTCGCTTCCCAACAAGTCATATATAGACCATGTCCTTATATCA
CAATCGTTACTAGATCTACTTGTTGACTCACACGTCCCCAAACCAGATGC
CTTGAATACAGGCGACCACCTAGCTGTTAAATTGACGTTACAATCCCCAC
CTTcaaccatagaggtataaagaaaacaggagttgaatgtgtcggtaatt
ggtcgttaaagtcttttgatttcttttataaaatgtatcaaaagaaattc
taagctcacAACGAAAAAAGTTTCTGTTCCATTTTGTTAACcgtgaaatt
ttgttttgaaaaaaatactttcttaaGCCAGAAAATggaaagttctttat
aagcaaacGNCTGACCAATGACTATATACCAACCCATATGTGGAGAAATA
GTGAATTTGTAAAACTATACAAGGAAAAAGTTTCAGAAAACATCACTAAA
ATCAACAATGTAATCGACACTGAAACCATGCTTGATAACCTACAGAATAT
CCTACACTCATCGGCATCTGACTGCTACACAACTTTTAAACAAGACTTCT
TCGAATTTCCAGCTAAACGCTGGTGGAACAACGAACTAACTGAAGCcaag
aaaaatttacaattacACTTTAACATTTGGCGAGAAAACAACTTCCCTAG
AAACGATTCAGACATCTCATATAACCGTTACAAATTCTCACGTAAGATAT
TCAGAACACTCGTTAAACGCGCAAAGCACCAAGCAACAGTTGAACACTAT
ATTAATGTGGAAAAGCTCAAGAACTTAAACCCATCTTCATACTGGGCTCA
AATTAATCTAATTAAGAAAAAGCAACAGAAATTATACACAATCAATGGCA
AATCTACCAAAATCGACATTGCTAAAGAATTCGGTGACCACTTTGATAAG
CTCCTTAATACACCAAGAATCGACACCATTGATAACACCACATCGAATGA
AGAACTTGTTAATATGCTACATGAACTTCAAAAAGATCTCAATTCCGACG
AATTTTACGTTACCTAGCATCATCAGTAatagaaaaactaaaaacagGTA
AATCTCGTGACCCTTTCCAGTTGTTACCAGAACATTACAAATATGCATCA
AGTGACACATTCAATGAATACCTCACCAAACTAATAAACGAAATATTTCG
CTCCAAAGACATTCCTACATCACTGAGTACGTCAATACTTATACCGCTGG
TGAAATCACACAAAAAGTCTTTGAACGACGCAAATAACTACCGTAGAATA
AGTCTTCTCTCGATCATCACAAAAATACTTGAACTTATCATTATTGAGAA
ATGCCCTCAACTTCTCAATACGGCTTCACTAAAGCATCATCATCGATTCA
TGCTGAGCTCGTCATCCAAGATACAATACGATATTATAATAACAACAATA
CACCGGTATACGTTTGTAGCCTGGACATAGAGAAAGCCTTTGACTGTTGC
AACTGGCAAACACTTTTCACCAAACTTCTTNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNctctaagggtcactttttcactaaaatttggtctctctaa
gggtcggttttcggaggtcccgtccgcacatacccctcattcaccaaccc
tagtacccctcccGGGCGCTGTATATACTTTTAGCTTTTTATTTTTCCCT
AACCATGTACCTTATCTTATAGGtgataaaaaagatttattattattatt
atagaattttttttcataatagtTATTTGGGGGGGTTGGCATTAGGTAGG
GCTGTCGAAATTGGGACCACTCACGCTATGcgtgcgtacagggggagggg
aggggtcaaagaaAAATGTATGTATGCAGAGAATAATTcttcatagccct
ttttttgcttgtagaatcttttgaaagagaataaaaagagaattattgtT
CGTTtattatacgcatcaaggaaaagaaaaagtttcttaataaacattga
gtttcatgtactatgaaataaaggtccgaattcgaaaatttcttcaaccg
agggggggggggctgaatgaaaaagtacacgTACTTACCAGGGGATATAG
CCATTTGCATCCCCttcccccccgggggggggggggctgaatgaaaaagt
acacgTACTTACCAGGGGATATAGCCATTTGCATCCCCttcccccccggg
ggggggggggctgaatgAAAAAGTGTACGTACTTAacagggggtatagcc
atttgcatACGCTTGCctacagggggagggggtactcgattttcaacatt
ttagtgcgtacgtactatgtggacggccccttatcCGGTTATCCGATGTT
AAAAAGTATCCTCATCCAACACCAGACGTGTGCCCAGTGTTTGTAAAGTC
TGGTGCGTTGGCAGagtatttttgccaaaaacctAGATTTTTTGCAAAAC
CTTTAGTAAAATGAAAGGAATTAGTTGAAAAAGTGAAAGCTAAAATATCT
ActcacaaaaaaattttccctcaAAAGGTAGTTTAAAAGTTTTGACAATA
TTTACATACTTTTTCTTtcataagaatatactttataagaataatcaTGA
TGAATTAAGGATATGCTTAtaataccaccatcatggaatttgacAACTGA
AGCTAACAATGTCAATTCTATAGCCTTTTACTTGTTAATAGCCAATTATT
CCCCAGTAATGCTGaagtttcacaaaaatgccaaattcttgTTTTATGTA
TACATTTCATCCTAGATTTAGGCTGtcatgatttttccaaaaaaataata
gtATCCATCATGATGAAATAGAAAAAcaccgttcttataaaaaagcgtct
aGTTGAAACATAAAGACAATCCTTCGCCTCGTTTCTATATGATGACAATA
GCGTTTTATTGAATTTCATTAGAAAGTGCTATAAACTCAGTTTTCTTTTC
TTGTATTTCGATGgctgaaattcatttttaattaattttaggCGGTTTCT
CGATTTGGAAGTTGACCAATTTATAGAAAACAATCCAGAAGTTGCTGTTT
ACCTCCAAGAAAGAAGAGGACAATCACCGAGGCTTGTGGCAAACTACTGT
ATGTTGCTTTCAtaatctcttcttttttttaatcgaTTTAAATCGAGCTC
AGTGTTTATGTCTAACATCTCGTAGTATACTATATACGACACTTTTTtct
aaaacatattttcaaagCACAGTAAAAACTTTAATTCATAGAAATGATAT
TTGAATTTCCTTAGATGATGTTTTAAAATCATGTCAAATAAATGAATATT
CATAAGTAtgagtaaaaaacttttttttctcggTCAAATCAAAATTGTGG
TTGTTTAATTTATTGCTCTCTAAAACGTTCCTTTCACAGTGAATGGAAAC
TCTCGTATCATACAGATCCCAAATAACGACGACATTGCCATTAGAGAATG
GTTAGAACGTTTACGAAACGAAAGTGGACGACAATGGAGAAGCGAGAGAT
TACATCAACCTTGGTTAAGTGATAATCCATCTATACAAGGAACGTGGTCA
CCTTTCCTTAACAAACCACCTGTTGATATTAACGATGAACATTATGTTGA
TAAGTGAGACCAAGgatattctttctttttgtatttttagattttttata
cATATAGTAAGCTGAAATGTAAATATGATTGAttgatacttttgaaaatt
gatatcgaactataaaattttgaaatccagGTTACAATTTTTGAACCCAC
AAAGAatgctttttcggatttttttttagtttccgATGGGAAAAGATGAC
GTTTAACTCTTTTTGGTCCAGGCTTTTTTGAAGAATAATAATCCGAGGAA
ggatacagggtgtcccgaaaaaaagccCTGTGTTAGACCACTCATTCTAT
GGTAGAAAGTTTTTTGTGTATAactcaaaaatcgaaatattcaatgaaat
aaAGTCGGAAATAAAGTGGAAGCTAAAATCgctattttcgccattttcgc
ccaaactctaaattttgaaaaatgttaaattaCACAAAAACCTCAATATT
ATTTCGACCAAGATTGTGGGAAAGATTTTTAATTTCTGTCATTATATAAT
AATGAATCTGAG Coding sequence (CDS) from alignment at sc0000047:190223..198984+ >TCONS_00004616 ID=TCONS_00004616|Name=TCONS_00004616|organism=Clytia hemisphaerica|type=CDS|length=1629bp|location=Sequence derived from alignment at sc0000047:190223..198984+ (Clytia hemisphaerica)
ATGAGTACCAGTAAAGTAAGAGGGCCCATTCAGAAAAGCTTGAAATATGT
TCCAAATGTCAAGGCAGTAACAACTCGTGCAAAGATGCTCAAAGTTCCAC
ATAAACATCCTTCAAATGATACATTCGAGCCTTTTTGGAAATTCGGAAGA
TATGTTTGTCAGTTAAAGAGATTGACAATAAACTATTGTTCTGATAATCC
AGGGAGTAGAGGCATTAGgCGGTTTCTCGATTTGGAAGTTGACCAATTTA
TAGAAAACAATCCAGAAGTTGCTGTTTACCTCCAAGAAAGAAGAGGACAA
TCACCGAGGCTTGTGGCAAACTACTTGAATGGAAACTCTCGTATCATACA
GATCCCAAATAACGACGACATTGCCATTAGAGAATGGTTAGAACGTTTAC
GAAACGAAAGTGGACGACAATGGAGAAGCGAGAGATTACATCAACCTTGG
TTAAGTGATAATCCATCTATACAAGGAACGTGGTCACCTTTCCTTAACAA
ACCACCTGTTGATATTAACGATGAACATTATGTTGATAAGTGAATGAGTA
CCAGTAAAGTAAGAGGGCCCATTCAGAAAAGCTTGAAATATGTTCCAAAT
GTCAAGGCAGTAACAACTCGTGCAAAGATGCTCAAAGTTCCACATAAACA
TCCTTCAAATGATACATTCGAGCCTTTTTGGAAATTCGGAAGATATGTTT
GTCAGTTAAAGAGATTGACAATAAACTATTGTTCTGATAATCCAGGGAGT
AGAGGCATTAGgCGGTTTCTCGATTTGGAAGTTGACCAATTTATAGAAAA
CAATCCAGAAGTTGCTGTTTACCTCCAAGAAAGAAGAGGACAATCACCGA
GGCTTGTGGCAAACTACTTGAATGGAAACTCTCGTATCATACAGATCCCA
AATAACGACGACATTGCCATTAGAGAATGGTTAGAACGTTTACGAAACGA
AAGTGGACGACAATGGAGAAGCGAGAGATTACATCAACCTTGGTTAAGTG
ATAATCCATCTATACAAGGAACGTGGTCACCTTTCCTTAACAAACCACCT
GTTGATATTAACGATGAACATTATGTTGATAAGTGAATGAGTACCAGTAA
AGTAAGAGGGCCCATTCAGAAAAGCTTGAAATATGTTCCAAATGTCAAGG
CAGTAACAACTCGTGCAAAGATGCTCAAAGTTCCACATAAACATCCTTCA
AATGATACATTCGAGCCTTTTTGGAAATTCGGAAGATATGTTTGTCAGTT
AAAGAGATTGACAATAAACTATTGTTCTGATAATCCAGGGAGTAGAGGCA
TTAGgCGGTTTCTCGATTTGGAAGTTGACCAATTTATAGAAAACAATCCA
GAAGTTGCTGTTTACCTCCAAGAAAGAAGAGGACAATCACCGAGGCTTGT
GGCAAACTACTTGAATGGAAACTCTCGTATCATACAGATCCCAAATAACG
ACGACATTGCCATTAGAGAATGGTTAGAACGTTTACGAAACGAAAGTGGA
CGACAATGGAGAAGCGAGAGATTACATCAACCTTGGTTAAGTGATAATCC
ATCTATACAAGGAACGTGGTCACCTTTCCTTAACAAACCACCTGTTGATA
TTAACGATGAACATTATGTTGATAAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004616-exon-sc0000047-1491911889:190223..190662 | TCONS_00004616-exon-sc0000047-1491911889:190223..190662 | Clytia hemisphaerica | exon |
| TCONS_00004616-exon-sc0000047-1510915933:190223..190662 | TCONS_00004616-exon-sc0000047-1510915933:190223..190662 | Clytia hemisphaerica | exon |
| TCONS_00004616-exon-sc0000047-1575043694:190223..190662 | TCONS_00004616-exon-sc0000047-1575043694:190223..190662 | Clytia hemisphaerica | exon |
| TCONS_00004616-exon-sc0000047-1491911889:190750..190976 | TCONS_00004616-exon-sc0000047-1491911889:190750..190976 | Clytia hemisphaerica | exon |
| TCONS_00004616-exon-sc0000047-1510915933:190750..190976 | TCONS_00004616-exon-sc0000047-1510915933:190750..190976 | Clytia hemisphaerica | exon |
| TCONS_00004616-exon-sc0000047-1575043694:190750..190976 | TCONS_00004616-exon-sc0000047-1575043694:190750..190976 | Clytia hemisphaerica | exon |
| TCONS_00004616-exon-sc0000047-1491911889:197864..197970 | TCONS_00004616-exon-sc0000047-1491911889:197864..197970 | Clytia hemisphaerica | exon |
| TCONS_00004616-exon-sc0000047-1510915933:197864..197970 | TCONS_00004616-exon-sc0000047-1510915933:197864..197970 | Clytia hemisphaerica | exon |
| TCONS_00004616-exon-sc0000047-1575043694:197864..197970 | TCONS_00004616-exon-sc0000047-1575043694:197864..197970 | Clytia hemisphaerica | exon |
| TCONS_00004616-exon-sc0000047-1491911889:198262..198984 | TCONS_00004616-exon-sc0000047-1491911889:198262..198984 | Clytia hemisphaerica | exon |
| TCONS_00004616-exon-sc0000047-1510915933:198262..198984 | TCONS_00004616-exon-sc0000047-1510915933:198262..198984 | Clytia hemisphaerica | exon |
| TCONS_00004616-exon-sc0000047-1575043694:198262..198984 | TCONS_00004616-exon-sc0000047-1575043694:198262..198984 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000047 | supercontig | sc0000047:190223..198984 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007741 | Ribosome/NADH_DH |
| IPR012336 | Thioredoxin-like_fold |
Blast
BLAST of TCONS_00004616 vs. Swiss-Prot (Human)
Match: RM43 (39S ribosomal protein L43, mitochondrial OS=Homo sapiens GN=MRPL43 PE=1 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 2.397e-21 Identity = 51/121 (42.15%), Postives = 68/121 (56.20%), Query Frame = 3
Query: 591 FGRYVCQLKRLTINYCSDNPGSRGIRRFLDLEVDQFIENNPEVAVYLQERRGQSPRLVANYLNGNSRIIQIPNNDDIAIREWLERLRNESGRQWRSERLHQPWLSDNPSIQGTWSPFLNKP 953
GRYV QL+RL+ + D SRG R F++ EV F NP V +Y+ R PR+VA YLNG R I I +++L ++SG R+ +P+ +DNPSIQG W PF NKP
Sbjct: 19 LGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPGVVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSG--LDVIRIRKPFHTDNPSIQGQWHPFTNKP 137
The following BLAST results are available for this feature:
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