TCONS_00004641-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00004641-protein
Unique Name	TCONS_00004641-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	398

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00004641-protein ID=TCONS_00004641-protein|Name=TCONS_00004641-protein|organism=Clytia hemisphaerica|type=polypeptide|length=398bp
MEQISDGIRKRRSVAKVFKELDAFPKVPEDYQETSTSGGTVSILVFLFIG
ILIVSEFIYYLDTDVKYQYEVDKDSEHKMRINIDMTVAMECNDIGADVLD
VAGASISTDEHLKMEPTYFKMSNNQLTWWQAFRKFRRFDEGFRSLREINQ
MSLIFGHVLPTYIPEIDKKEFADREPDACRIYGNVEVNKVAGNFHVTAGK
SIPHPRGHAHLSSLVSELNYNFSHRIDLLSFGDPHPGLINPMDGDLQIAE
KGYHMFQYYIKIVPTYIQTVREDMKANQFSVTQRSRPIDHTKGSHGVPGI
FFKYDFNAVSVRIKEERRDFSQFLVRLCGIIGGVFATSGMLHSLVGFLAD
SIMCQIKKQRASAMKVPISQPLMNPAQQQSGGGLSQQNPQVSLLPQVQ

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_002614	XLOC_002614	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00004641	TCONS_00004641	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012936	Erv_C

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012936	Endoplasmic reticulum vesicle transporter, C-terminal	PFAM	PF07970	COPIIcoated_ERV	coord: 170..341 e-value: 9.8E-49 score: 166.1
None	No IPR available	PFAM	PF13850	ERGIC_N	coord: 18..104 e-value: 5.3E-28 score: 97.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 374..398

Blast

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BLAST of TCONS_00004641-protein vs. Swiss-Prot (Human)
Match: ERGI2 (Endoplasmic reticulum-Golgi intermediate compartment protein 2 OS=Homo sapiens GN=ERGIC2 PE=1 SV=2)

HSP 1 Score: 348.206 bits (892), Expect = 3.941e-118
Identity = 170/348 (48.85%), Postives = 235/348 (67.53%), Query Frame = 0

Query:   11 RRSVAKVFKELDAFPKVPEDYQETSTSGGTVSILVFLFIGILIVSEFIYYLDTDVKYQYEVDKDSEHKMRINIDMTVAMECNDIGADVLDVAGASISTDEHLKMEPTYFKMSNNQLTWWQAFRKFRRFDEGFRSLREINQMSLIFGHVLPTYIPEIDKKEF-ADREPDACRIYGNVEVNKVAGNFHVTAGKSIPHPRGHAHLSSLVSELNYNFSHRIDLLSFGDPHPGLINPMDGDLQIAEKGYHMFQYYIKIVPTYIQTVREDMKANQFSVTQRSRPIDHTKGSHGVPGIFFKYDFNAVSVRIKEERRDFSQFLVRLCGIIGGVFATSGMLHSLVGFLADSIMCQIK 357
            R+    + KELDAFPKVPE Y ETS SGGTVS++ F  + +L + EF  Y DT +KY+YEVDKD   K+RINID+TVAM+C  +GADVLD+A   +++ + L  EPT F +S  Q  W +  +  +   +   SL+++     IF     +    +  +E  + + P+ACRI+G++ VNKVAGNFH+T GK+IPHPRGHAHL++LV+  +YNFSHRID LSFG+  P +INP+DG  +IA     MFQY+I +VPT + T +     +QFSVT+R R I+H  GSHGV GIF KYD +++ V + EE   F QF VRLCGI+GG+F+T+GMLH +  F+ + I C+ +
Sbjct:    6 RKKTLSLVKELDAFPKVPESYVETSASGGTVSLIAFTTMALLTIMEFSVYQDTWMKYEYEVDKDFSSKLRINIDITVAMKCQYVGADVLDLAETMVASADGLVYEPTVFDLSPQQKEWQRMLQLIQSRLQEEHSLQDV-----IFKSAFKSTSTALPPREDDSSQSPNACRIHGHLYVNKVAGNFHITVGKAIPHPRGHAHLAALVNHESYNFSHRIDHLSFGELVPAIINPLDGTEKIAIDHNQMFQYFITVVPTKLHTYKISADTHQFSVTERERIINHAAGSHGVSGIFMKYDLSSLMVTVTEEHMPFWQFFVRLCGIVGGIFSTTGMLHGIGKFIVEIICCRFR 348

The following BLAST results are available for this feature:

BLAST of TCONS_00004641-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00004641-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ERGI2	3.941e-118	48.85	Endoplasmic reticulum-Golgi intermediate compartme...	[more]

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TCONS_00004641-protein (polypeptide) - C. hemisphaerica