TCONS_00004668-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004668-protein
Unique NameTCONS_00004668-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length368

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004668-protein ID=TCONS_00004668-protein|Name=TCONS_00004668-protein|organism=Clytia hemisphaerica|type=polypeptide|length=368bp
FRQSFSPRNNHSNSPQRYRFNNTPSKTNAEKTTTPTAIKPEETKAPTPNN
QQNRQRSRSPVDRNTTSNTKQEVKTEQASPVVPESKPAATTPKPAANSKP
ANSPKPGNKNNTPNKPNNTPNKPNNTPNKPNNTANTNNDNNERVRYTGRP
GEKKFSNKCRLFVANLNTNMTEDEVKGLFTPFGELSEIFFNKEKGFGFVR
LDYRINAEDAKRALDKKLVKGRNIQVRYATHASSIELHGLDEYASNELIN
DAMSQFGKVEKANIICDERGKSRGYAIVEFEWKKSAQKVLDRFKNELFVL
GREREFQPRFVSADSFEYQMACKWRDLNLEEQEKKAQLDQELQNARYNVQ
MEMESLKEERDAMKMREG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002631XLOC_002631Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004668TCONS_00004668Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012975NOPS
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 328..359
NoneNo IPR availableGENE3D3.30.70.330coord: 233..364
e-value: 2.4E-14
score: 53.0
NoneNo IPR availableGENE3D3.30.70.330coord: 108..232
e-value: 8.8E-19
score: 67.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..152
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 160..227
e-value: 7.9E-16
score: 68.6
coord: 234..307
e-value: 1.0E-5
score: 35.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 161..224
e-value: 9.4E-14
score: 50.9
coord: 239..295
e-value: 2.5E-12
score: 46.3
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 159..231
score: 15.886
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 233..313
score: 12.202
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 158..295
IPR012975NOPSPFAMPF08075NOPScoord: 302..325
e-value: 9.4E-6
score: 25.6

Blast
[Close]
BLAST of TCONS_00004668-protein vs. Swiss-Prot (Human)
Match: NONO (Non-POU domain-containing octamer-binding protein OS=Homo sapiens GN=NONO PE=1 SV=4)

HSP 1 Score: 187.193 bits (474), Expect = 6.634e-55
Identity = 96/251 (38.25%), Postives = 149/251 (59.36%), Query Frame = 0 
Query:  149 RPGEKKFSNKCRLFVANLNTNMTEDEVKGLFTPFGELSEIFFNKEKGFGFVRLDYRINAEDAKRALDKKLVKGRNIQVRYATHASSIELHGLDEYASNELINDAMSQFGKVEKANIICDERGKSRGYAIVEFEWKKSAQKVLDRFKNELFVL--------------------------------GREREFQPRFVSADSFEYQMACKWRDLNLEEQEKKAQLDQELQNARYNVQMEMESLKEERDAMKMRE 367
            +PGEK F+ + RLFV NL  ++TE+E++ LF  +G+  E+F +K+KGFGF+RL+ R  AE AK  LD   ++G+ ++VR+A H++S+ +  L +Y SNEL+ +A S FG+VE+A +I D+RG+  G  IVEF  K +A+K LDR     F+L                                 +ERE  PRF    SFEY+ A +W+ L   E++++ Q+D+ ++ AR  ++MEME+ + E   M MR+
Sbjct:   64 KPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQQFHKEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNIKEAREKLEMEMEAARHEHQVMLMRQ 314
The following BLAST results are available for this feature:
BLAST of TCONS_00004668-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NONO6.634e-5538.25Non-POU domain-containing octamer-binding protein ... [more]
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