|
|
Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00004758-protein ID=TCONS_00004758-protein|Name=TCONS_00004758-protein|organism=Clytia hemisphaerica|type=polypeptide|length=678bp
LKTIMIMKMNHDGIIPISCDACRTKIMEKHYIMVGAKTRLHYKCLRCSSC
QCSLSTAQTCYEKMEKIFCKNCYLIIWSKTKCQRCQRGISNTDLVMQAHK
CYYHVECFACYSCGIHLKKGQRFGVKDQKVYCELHYKQIRLPATLPVNDT
NNNIGTREKLDRRYSMPSLSQHFNVKDEPCRSLSPLTQTPFPQHKQQHQQ
QQQQILDISNHRSPILRQLSDPSNIHSSDNKTTELKPISSSLNFSDHLPE
PLVTNLSPRTFTSKKIDNQLKPLSSSLNFSDHFPDPLVTNSSPKTFTPTK
EIDNKLNDPAINIQQNQWKVNKPQSFTDTYTSFPFNFPNTSGHPRKHPNS
SHSGSADSSFSLKRHQSSEPLVSPVLQKKFLPEPSVKLSESQTLQSPMSS
ISSYFQNLGKNSAPDCKPFISLEKHKENSNNDMKTFTNLFTEKNERETKS
FINLDVKKQIASSDIEITTNPSSSKTSPVDIHSSRKPPPAYSDFQPLTFS
DNEPENDKFQDQTESQDTKGSDSNDFPTIKTGSNSSSSDEDGSQEPKKAT
KATSTKSRKSRSKDNKPKRQRTSFKVYQLVAMKELFDCDKNPDSIKLTLL
ADKIDLPKRVLQVWFQNARAKHRKGQNIFSDTIEKMLLPENVGKALEKES
QGDENEDCVEDQSLEFDDETKDPTDDVS Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0043565 | sequence-specific DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR001781 | Zinc finger, LIM-type | SMART | SM00132 | lim_4 | coord: 81..135
e-value: 9.5E-13
score: 58.4
coord: 18..72
e-value: 2.7E-7
score: 40.2 |
| IPR001781 | Zinc finger, LIM-type | PFAM | PF00412 | LIM | coord: 82..138
e-value: 1.0E-12
score: 48.0
coord: 19..74
e-value: 1.0E-7
score: 32.0 |
| IPR001781 | Zinc finger, LIM-type | PROSITE | PS00478 | LIM_DOMAIN_1 | coord: 82..117 |
| IPR001781 | Zinc finger, LIM-type | PROSITE | PS50023 | LIM_DOMAIN_2 | coord: 17..79
score: 11.425 |
| IPR001781 | Zinc finger, LIM-type | PROSITE | PS50023 | LIM_DOMAIN_2 | coord: 80..142
score: 13.187 |
| IPR001356 | Homeobox domain | SMART | SM00389 | HOX_1 | coord: 567..629
e-value: 5.2E-17
score: 72.5 |
| IPR001356 | Homeobox domain | PFAM | PF00046 | Homeobox | coord: 568..624
e-value: 2.3E-15
score: 56.0 |
| IPR001356 | Homeobox domain | PROSITE | PS50071 | HOMEOBOX_2 | coord: 565..625
score: 15.192 |
| None | No IPR available | GENE3D | 2.10.110.10 | | coord: 78..220
e-value: 2.0E-16
score: 59.5 |
| None | No IPR available | GENE3D | 2.10.110.10 | | coord: 17..76
e-value: 3.1E-8
score: 33.1 |
| None | No IPR available | GENE3D | 1.10.10.60 | | coord: 539..624
e-value: 1.6E-17
score: 62.8 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 184..204 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 218..237 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 465..571 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 331..376 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 644..678 |
| None | No IPR available | CDD | cd00086 | homeodomain | coord: 568..626
e-value: 8.07756E-13
score: 63.4164 |
| None | No IPR available | CDD | cd08368 | LIM | coord: 19..73
e-value: 5.28705E-9
score: 52.3199 |
| None | No IPR available | SUPERFAMILY | 57716 | Glucocorticoid receptor-like (DNA-binding domain) | coord: 46..113 |
| IPR017970 | Homeobox, conserved site | PROSITE | PS00027 | HOMEOBOX_1 | coord: 600..623 |
| IPR009057 | Homeobox domain-like | SUPERFAMILY | 46689 | Homeodomain-like | coord: 557..624 |
Blast
BLAST of TCONS_00004758-protein vs. Swiss-Prot (Human)
Match: LHX2 (LIM/homeobox protein Lhx2 OS=Homo sapiens GN=LHX2 PE=1 SV=2) HSP 1 Score: 107.842 bits (268), Expect = 4.618e-25 Identity = 46/121 (38.02%), Postives = 71/121 (58.68%), Query Frame = 0
Query: 19 CDACRTKIMEKHYIMVGAKTRLHYKCLRCSSCQCSLSTAQTCYEKMEKIFCKNCYLIIWSKTKCQRCQRGISNTDLVMQAHKCYYHVECFACYSCGIHLKKGQRFGVKDQKVYCELHYKQI 139
C C KI +++Y++ K + H +CL+C C+ +L + TC+ K I+CK Y +S +C RC GIS +++VM+A YH+ CF C +C L G FG+KD VYC LH++ +
Sbjct: 53 CAGCGGKISDRYYLLAVDK-QWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 172
The following BLAST results are available for this feature:
|
