TCONS_00004766-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00004766-protein
Unique Name	TCONS_00004766-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	645

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00004766-protein ID=TCONS_00004766-protein|Name=TCONS_00004766-protein|organism=Clytia hemisphaerica|type=polypeptide|length=645bp
MNIIFGKIISMILTFLIIWNVWILMTQKDDQKKPSEKDIFIDRFDEFLAQ
QDHDKKNIMNGRQGKLDSRVGSIGKNTFLDSTHLKRGYINVYYYIDICHN
YDNYATKWNILFPEFPAKAELQENFYDERIVNSERVSRRMIAFLQPDLTE
NYSFRIESQTGCEVRIIEGPYFGKERHYDTFMLQFGLYKGQLQAEKNTNK
PGKVYTVTSHEILLQKGKKYLIDVLHALPGKGFLRLKWKCKKEEHYMKID
PSLLTTLYSKPKVTDILPNVKYDVRVTEKSELLAKDRRLMFHQLQNIEQK
MVKECEYWASYIPDRFPPDHGVAYVVVDKVYPKDVLIEHHDPRGYYDLYI
DEKTAMKVAKKFMGTLSSEYKLKHIVHIEENKETKQLKRYFIEVDVNKHG
SEALYRYSGWIIVKEDESSEICQPRGYKWKRDEKIYLITPVKNQARWVRF
MIKHLNDIMAHTNERHIHLILYDFGSTDANLKEILQQATFEHSYMRNEQK
FSKVIGLNRAVSSIQEEDPIIFILDLQLQLPIFLFDYIRKHTFREKTVYV
PILLRLGCGEHTAFTKLTDQSIWQEIGYGMIALFKSDWLKIGGMNETRFS
QKWGGEDWEFVDRVLINKMEVIHHRLPGYYHIYHSNKNTWDGTKN

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_002698	XLOC_002698	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00004766	TCONS_00004766	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR008428	Chond_GalNAc
IPR029044	Nucleotide-diphossugar_trans

Vocabulary: **Molecular Function**
Term	Definition
GO:0008376	acetylgalactosaminyltransferase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0032580	Golgi cisterna membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0032580	Golgi cisterna membrane
molecular_function	GO:0008376	acetylgalactosaminyltransferase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.60.120.380		coord: 73..237 e-value: 3.7E-5 score: 23.4
IPR008428	Chondroitin N-acetylgalactosaminyltransferase	PFAM	PF05679	CHGN	coord: 427..636 e-value: 8.0E-16 score: 57.8
IPR029044	Nucleotide-diphospho-sugar transferases	GENE3D	3.90.550.10		coord: 368..645 e-value: 2.0E-16 score: 59.6
IPR029044	Nucleotide-diphospho-sugar transferases	SUPERFAMILY	53448	Nucleotide-diphospho-sugar transferases	coord: 429..641

Blast

[Close]

BLAST of TCONS_00004766-protein vs. Swiss-Prot (Human)
Match: B4GN4 (N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1 OS=Homo sapiens GN=B4GALNT4 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.021e-50
Identity = 95/321 (29.60%), Postives = 164/321 (51.09%), Query Frame = 0

Query:  347 DLYIDEKTAMKVAKKFMGTLSSE----YKLKHIVHIEENKETKQLKRYFIEVDVNKHGSEAL-------YRYSGWII---------------VKEDESSEICQPRGYKWKRDEKIYLITPVKNQARWVRFMIKHLNDIMAHTNERHIHLILYDFGSTDANLKEILQQATF-EHSYMRNEQKFSKVIGLNRAVSSIQEEDPIIFILDLQLQLPIFLFDYIRKHTFREKTVYVPILLRLGCGEHTAFTKLTDQSIWQEIGYGMIALFKSDWLKIGGMNETRFSQKWGGEDWEFVDRVLINKMEVIHHRLPGYYHIYHSNKNTW 640
            +L + E  A+ V  ++M  L++     + L  IV++E+ +++ +  R+ +E+++ + G   L        R  G  +               V+ D   E+C+P    W++D  ++ I PVKNQARWV   +  +  + A T +    ++L DF S D +++  L+ A    + Y+R    F +  GL   V ++++   I+F+ DL +  P  + D IRKH    +  + P+++RL CG     +       W+  G+G+  ++KSD+ ++GGMN   F  +WGGEDWE +DRVL   +EV   RL  +YH YHS +  W
Sbjct:  710 NLQLPEAEAVDVTAQYMERLNARHGGRFALLRIVNVEKRRDSARGSRFLLELELQERGGGRLRLSEYVFLRLPGARVGDADGESPEPAPAASVRPDGRPELCRPLRLAWRQDVMVHFIVPVKNQARWVAQFLADMAALHARTGDSRFSVVLVDFESEDMDVERALRAARLPRYQYLRRTGNFERSAGLQAGVDAVEDASSIVFLCDLHIHFPPNILDGIRKHCVEGRLAFAPVVMRLSCGS----SPRDPHGYWEVNGFGLFGIYKSDFDRVGGMNTEEFRDQWGGEDWELLDRVLQAGLEVERLRLRNFYHHYHSKRGMW 1026

The following BLAST results are available for this feature:

BLAST of TCONS_00004766-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00004766-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
B4GN4	2.021e-50	29.60	N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-a...	[more]

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TCONS_00004766-protein (polypeptide) - C. hemisphaerica