TCONS_00004858-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00004858-protein
Unique Name	TCONS_00004858-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	291

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00004858-protein ID=TCONS_00004858-protein|Name=TCONS_00004858-protein|organism=Clytia hemisphaerica|type=polypeptide|length=291bp
MADPLTLLRQFNTAKKHIVEREDQIVFETISFFKTAKTNYVIGRTTPREY
YTLEALLFLLKNVQLSHPIYVQRAGAANVPVVRFPDRKDLLAYLNGEKDQ
SANVDKSAPLELPISRTTAIGIKRSGEDTVSEASKKAKITDTQNKKDIQE
WLQNKLNKKEGAIITDDIKEGKSGLNEVMSIDRIAEIKRKIMTRKRGTIK
GGEDYNPEVPQVVPMESNVTGIQNFVVDADNEMTKDILNRERHLRTRTSV
LQSNGKQFLKNILAILTSIKAQEEGKSNPEQQPQPAVPVKV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_002751	XLOC_002751	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00004858	TCONS_00004858	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR032041	Cdc73_N

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032041	Paf1 complex subunit Cdc73, N-terminal domain	PFAM	PF16050	CDC73_N	coord: 1..285 e-value: 1.6E-88 score: 296.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 272..291

Blast

[Close]

BLAST of TCONS_00004858-protein vs. Swiss-Prot (Human)
Match: CDC73 (Parafibromin OS=Homo sapiens GN=CDC73 PE=1 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 3.467e-80
Identity = 143/296 (48.31%), Postives = 201/296 (67.91%), Query Frame = 0

Query:    1 MADPLTLLRQFNTAKKHIVEREDQIVFETISFFKTAKTNYVIGRT----TPREYYTLEALLFLLKNVQLSHPIYVQRAGAANVPVVRFPDRKDLLAYLNGEKDQSANVDKSAPLELPISRTTAIGIKRSGEDTVSEASKKAKITDTQNKKDIQEWLQNKL-NKKEGAIITDDIKEGKSGLNEVMSIDRIAEIKRKIMTRKRGTIKGGEDYNPEVPQVVPMESNVTGI-QNFVVDADNEMTKDILNRERHLRTRTSVLQSNGKQFLKNILAILTSIKAQEEGKSNPEQQPQP-AVPV 289
            MAD L++LRQ+N  KK IV + D+++F   S+ K  KTNYV+  T     PREYYTL+++LFLL NV LSHP+YV+RA   N+PVVR PDRKDLL YLNGE   SA++D+SAPLE+ + R+T   +KR+ ++ ++EA KK +I D +  +  +E L  +L   KEG + T+ I+     L+E MS+++IA IK KIM +KR TIK              ++ ++T + Q   VDA+ ++T+DI++RER  RTRT++LQS GK F KNI AIL S+KA+EEG++ PEQ+P P A PV
Sbjct:    1 MADVLSVLRQYNIQKKEIVVKGDEVIFGEFSWPKNVKTNYVVWGTGKEGQPREYYTLDSILFLLNNVHLSHPVYVRRAATENIPVVRRPDRKDLLGYLNGEASTSASIDRSAPLEIGLQRSTQ--VKRAADEVLAEA-KKPRIEDEECVRLDKERLAARLEGHKEGIVQTEQIR----SLSEAMSVEKIAAIKAKIMAKKRSTIKTD------------LDDDITALKQRSFVDAEVDVTRDIVSRERVWRTRTTILQSTGKNFSKNIFAILQSVKAREEGRA-PEQRPAPNAAPV 276

The following BLAST results are available for this feature:

BLAST of TCONS_00004858-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00004858-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CDC73	3.467e-80	48.31	Parafibromin OS=Homo sapiens GN=CDC73 PE=1 SV=1	[more]

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TCONS_00004858-protein (polypeptide) - C. hemisphaerica