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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00004892-protein ID=TCONS_00004892-protein|Name=TCONS_00004892-protein|organism=Clytia hemisphaerica|type=polypeptide|length=683bp
MKLLVTLCFFAVFSYNVALPATTTAHKAKSTIPVITTTVAAPTEPETTTA
APTTTAAAPTTTAAAPKTTTAAPTTTAAAPTNTTAAPKTTTAAPKTTTAA
PTTTAAAPETTAAAPTNTTTAPTTTTTAPTTTTTTPAPTINPFCIGKVEF
NADPKNCSQFIRCPRTGKLKGHAVVYHCPPTLVFNVAGEYCDWPRNVKCK
DGIRPTKRPRTTTPPKVTKPATTAAATTEAPTTTEAPTTTAKAPTTTTKA
APTTTAAKETTTAAAKETTTAAAKETTTAAAKETTTAAAKETTTAAAKET
TTAEAKETTTAAAKETTTAAAKETTTAAAKETTTAAAKETTTAAAKETTT
TAPTTTTTATTTISTTTPDPFCIGKPERNIFPGSCHKYITCIDGKKGVVN
CWWYKYDPTLKKCVNPHSVLCKDGEFFTTTTTTTTTTTTTPFTGSTIPTT
RPKTTKSVCAKSGEYYIRDSKDCSKFIHCQGSRPTFKTCPGVLVFDVEKN
VCNWRFAVDCGDATTAAPVTTTTKAPATTRKPETTIAAPKTTTKAPATTQ
KAPKTTTVAAPETTTVAAPATTTAAAPETTTKAPKTTTAAPKTTTVAAPE
TTTTVAAPETTVKIATTKAKPTTTEAQSLCKGKSGPVPHPKDCTKYFQCV
HGRSYDRSCPTGLHFDKKNGYCNWPAVAKCSTH Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002557 | Chitin-bd_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006030 | chitin metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008061 | chitin binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006030 |
chitin metabolic process |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0008061 |
chitin binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR002557 | Chitin binding domain | SMART | SM00494 | chi_10 | coord: 142..201
e-value: 3.6E-10
score: 49.8
coord: 370..423
e-value: 4.6
score: 12.3
coord: 628..682
e-value: 5.6E-16
score: 69.1
coord: 457..512
e-value: 3.9E-10
score: 49.7 |
| IPR002557 | Chitin binding domain | PFAM | PF01607 | CBM_14 | coord: 459..510
e-value: 1.6E-10
score: 40.9
coord: 630..680
e-value: 1.2E-12
score: 47.7
coord: 150..199
e-value: 6.5E-9
score: 35.7 |
| IPR002557 | Chitin binding domain | GENE3D | 2.170.140.10 | | coord: 355..435
e-value: 2.2E-4
score: 20.5
coord: 448..523
e-value: 9.7E-15
score: 53.7
coord: 125..211
e-value: 5.0E-12
score: 45.0
coord: 619..683
e-value: 2.1E-16
score: 59.0 |
| IPR002557 | Chitin binding domain | PROSITE | PS50940 | CHIT_BIND_II | coord: 369..423
score: 7.342 |
| IPR002557 | Chitin binding domain | PROSITE | PS50940 | CHIT_BIND_II | coord: 627..682
score: 14.877 |
| IPR002557 | Chitin binding domain | PROSITE | PS50940 | CHIT_BIND_II | coord: 141..201
score: 11.452 |
| IPR002557 | Chitin binding domain | PROSITE | PS50940 | CHIT_BIND_II | coord: 456..512
score: 12.936 |
| IPR002557 | Chitin binding domain | SUPERFAMILY | 57625 | Invertebrate chitin-binding proteins | coord: 142..206 |
| IPR002557 | Chitin binding domain | SUPERFAMILY | 57625 | Invertebrate chitin-binding proteins | coord: 366..432 |
| IPR002557 | Chitin binding domain | SUPERFAMILY | 57625 | Invertebrate chitin-binding proteins | coord: 627..682 |
| IPR002557 | Chitin binding domain | SUPERFAMILY | 57625 | Invertebrate chitin-binding proteins | coord: 454..521 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 43..134 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 570..596 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 202..360 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 521..557 |
| None | No IPR available | SUPERFAMILY | 69349 | Phage fibre proteins | coord: 254..372 |
Blast
The following BLAST results are available for this feature:
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