TCONS_00004909-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004909-protein
Unique NameTCONS_00004909-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length354

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004909-protein ID=TCONS_00004909-protein|Name=TCONS_00004909-protein|organism=Clytia hemisphaerica|type=polypeptide|length=354bp
MSENDTDDTKRPRKKDKYRKDKPWDHDGIDHWNVDEFKPEDNPHGMLEES
SFATLFPKYRETYLREVWPLLEDKLKEFGIRCHLDAVEGSMTVSTTRKTF
DPYIIIKCRDLIKLLSRGVPYEQASRVLEDEKTCDIIKIRNLVRNKERFI
KRRQRLVGPNGATLKALELLTECYILVQGGTVSAIGSFKGLKQVRKIVED
TLKNVHPIYNIKILMIKRELAKDPVLKDENWDRFLPKFKSKNVQRKKVKI
KEKKPYTPFPPQQTESKVDKELASGEYFLKQDEKAAKKRQLKDQKQEEAG
QNRKRKRDKSFVPPTENKKKEKKKDTTSLADVDVEKIKKKVKFAQKKKKK
ISSS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002777XLOC_002777Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004909TCONS_00004909Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004087KH_dom
IPR024166rRNA_assembly_KRR1
IPR004088KH_dom_type_1
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004087K Homology domainSMARTSM00322kh_6coord: 131..203
e-value: 9.4E-5
score: 31.8
IPR024166Ribosomal RNA assembly KRR1PIRSFPIRSF006515KRR1coord: 1..352
e-value: 1.6E-157
score: 521.7
IPR004088K Homology domain, type 1GENE3D3.30.1370.10coord: 129..232
e-value: 4.6E-7
score: 29.1
IPR004088K Homology domain, type 1SUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 133..234
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 246..268
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 283..331
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28

Blast
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BLAST of TCONS_00004909-protein vs. Swiss-Prot (Human)
Match: KRR1 (KRR1 small subunit processome component homolog OS=Homo sapiens GN=KRR1 PE=1 SV=4)

HSP 1 Score: 388.267 bits (996), Expect = 1.603e-134
Identity = 191/310 (61.61%), Postives = 236/310 (76.13%), Query Frame = 0 
Query:   30 DHWNVDEFKPEDNPHGMLEESSFATLFPKYRETYLREVWPLLEDKLKEFGIRCHLDAVEGSMTVSTTRKTFDPYIIIKCRDLIKLLSRGVPYEQASRVLEDEKTCDIIKIRNLVRNKERFIKRRQRLVGPNGATLKALELLTECYILVQGGTVSAIGSFKGLKQVRKIVEDTLKNVHPIYNIKILMIKRELAKDPVLKDENWDRFLPKFKSKNVQRKKVKIKEKKP--YTPFPPQQTESKVDKELASGEYFLKQDEKAAKKRQLKDQKQEEAGQNRKRKRDKSFVPPTENKKKEKKKDTTSLADVDVEKI 337
            D W    F  EDNP G+LEESSFATLFPKYRE YL+E WPL++  L E  +   LD +EGSMTV TT+KTFDPYIII+ RDLIKLL+R V +EQA R+L+D+  CDIIKI +LVRNKERF+KRRQRL+GP G+TLKALELLT CYI+VQG TVSAIG F GLK+VRK+V DT+KN+HPIYNIK LMIKRELAKD  L+ ++W+RFLP+FK KNV ++K   K+     YTPFPP Q ES++DKELASGEYFLK ++K  +K +    KQ EA   R+ +R+K+F+PP E K   K K+ ++   +DV  I
Sbjct:   38 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFSGLKEVRKVVLDTMKNIHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKRQEERNKAFIPPKE-KPIVKPKEASTETKIDVASI 346
The following BLAST results are available for this feature:
BLAST of TCONS_00004909-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KRR11.603e-13461.61KRR1 small subunit processome component homolog OS... [more]
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