TCONS_00004910-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00004910-protein
Unique Name	TCONS_00004910-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	241

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00004910-protein ID=TCONS_00004910-protein|Name=TCONS_00004910-protein|organism=Clytia hemisphaerica|type=polypeptide|length=241bp
MPSDKKKSRSSKSEEAFAFDMETKENAPAEEAPAISGKGRKRPAPHISHT
YSDDSDSEEIKNDEPSTGVESEMSTLLNSFGADISKTLSAKRKRLTTFTN
ASMKTSNRKYDEIFTTQHAEREKMQEEFGKQISSVFTQWEGDIQKSKDAE
EKLEAIVRQLQKTLQQQRVVQNQRLKSLRTLQDQYMKGLNDLSKMHREQQ
LNINAELRKDLSNLQKKMMDDARQEEMVNVRKSLQSMLSQV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_002778	XLOC_002778	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00004910	TCONS_00004910	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006888	XLR/SYCP3/FAM9_dom

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 197..224
None	No IPR available	COILS	Coil	Coil	coord: 143..166
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..74
IPR006888	XLR/SYCP3/FAM9 domain	PFAM	PF04803	Cor1	coord: 86..217 e-value: 1.8E-39 score: 134.9

Blast

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BLAST of TCONS_00004910-protein vs. Swiss-Prot (Human)
Match: SYCP3 (Synaptonemal complex protein 3 OS=Homo sapiens GN=SYCP3 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 9.630e-45
Identity = 86/226 (38.05%), Postives = 136/226 (60.18%), Query Frame = 0

Query:   16 AFAFDMETKENAPAEEAPAISGKG---RKRPAPHISHTYSDDSDSEEIKNDEPSTGVESEMSTLLNSFGADISKTLSAKRKRLTTFTNASMKTSNRKYDEIFTTQHAEREKMQEEFGKQISSVFTQWEGDIQKSKDAEEKLEAIVRQLQKTLQQQRVVQNQRLKSLRTLQDQYMKGLNDLSKMHREQQLNINAELRKDLSNLQKKMMDDARQEEMVNVRKSLQSML 238
            A+ F+ E K++    E   I GK     KR     S    +D              +  E+  +L   G DI+K L AKRKRL  +T AS+KTSN+K + ++ TQ  +R+K+ +E+ +Q  ++F QW+ D+QK+++ EEK+  + RQ QK LQQ R+VQ+QRLK+++ L +Q++K + +L K H         E +K+++ LQKK+M + +Q+E+ +VRKSLQSML
Sbjct:   24 AYDFETEDKKDLSGSEEDVIEGKTAVIEKRRKKRSSAGVVED--------------MGGEVQNMLEGVGVDINKALLAKRKRLEMYTKASLKTSNQKIEHVWKTQQDQRQKLNQEYSQQFLTLFQQWDLDMQKAEEQEEKILNMFRQQQKILQQSRIVQSQRLKTIKQLYEQFIKSMEELEKNHDNLLTGAQNEFKKEMAMLQKKIMMETQQQEIASVRKSLQSML 235

The following BLAST results are available for this feature:

BLAST of TCONS_00004910-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00004910-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SYCP3	9.630e-45	38.05	Synaptonemal complex protein 3 OS=Homo sapiens GN=...	[more]

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TCONS_00004910-protein (polypeptide) - C. hemisphaerica