TCONS_00004919-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004919-protein
Unique NameTCONS_00004919-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length497

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004919-protein ID=TCONS_00004919-protein|Name=TCONS_00004919-protein|organism=Clytia hemisphaerica|type=polypeptide|length=497bp
MAAIKHDFQGKSNKSSTTAQVPGVFTSEILKSVVESVGYDKPADEALQYL
SENLTFVIKETIQEATKFRNKSKRKMLSPADIDHALKVRNIEPVYGFTNK
HYVPFRHASGGGREIYFQEDVDIDLEDLMSQSLPKAPLEITLKSHWLAID
GIQPSIPENPPPIKKEMQLNEVVSPFSKSRHIKEVGVDKVGSLNKNSTKE
GKKESKSDKRKAEELKKIADEKADSQKCKPLVTHELSVEQQMYYKELTEA
SVGSIETKRTEALQSLSNDPGLYQLLPRFITFISEGVRVNVAQHNLAILI
YLLRMIKSLLENSTLYLEKYLHEVIPAVMTCIVSKQLCPRPDFDNHWALR
DFAARLMAQICKHFNTPTNNIQPRITKSLSLSLDMEKAPLSTHYGALAGL
SELGFEVIKSIVLPRIKSESGLIKEAINGNNSAEKKAAEHLQALLVKHCT
PVIFKTLSHGVVETQEQFVDKFGFVGNLIFQKVNQMKLTSLNRQQIX
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002784XLOC_002784Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004919TCONS_00004919Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004823TAF_TATA-bd
IPR011989ARM-like
IPR011442TAF6_C
IPR016024ARM-type_fold
IPR009072Histone-fold
Vocabulary: Biological Process
TermDefinition
GO:0006352DNA-templated transcription, initiation
GO:0051090regulation of sequence-specific DNA binding transcription factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006352 DNA-templated transcription, initiation
biological_process GO:0051090 regulation of sequence-specific DNA binding transcription factor activity
cellular_component GO:0005634 nucleus
molecular_function GO:0005488 binding
molecular_function GO:0046982 protein heterodimerization activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 202..222
NoneNo IPR availableGENE3D1.10.20.10coord: 17..99
e-value: 1.5E-9
score: 37.7
NoneNo IPR availableCDDcd08050TAF6coord: 26..408
e-value: 7.67991E-157
score: 451.778
IPR004823TATA box binding protein associated factor (TAF)SMARTSM00803TAF_clscoord: 23..87
e-value: 6.5E-15
score: 65.5
IPR004823TATA box binding protein associated factor (TAF)PFAMPF02969TAFcoord: 24..87
e-value: 1.3E-14
score: 54.0
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 213..473
e-value: 1.8E-5
score: 23.0
IPR011442TAF6, C-terminal HEAT repeat domainPFAMPF07571TAF6_Ccoord: 328..417
e-value: 9.1E-30
score: 102.8
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 267..473
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 25..97

Blast
[Close]
BLAST of TCONS_00004919-protein vs. Swiss-Prot (Human)
Match: TAF6 (Transcription initiation factor TFIID subunit 6 OS=Homo sapiens GN=TAF6 PE=1 SV=1)

HSP 1 Score: 495.738 bits (1275), Expect = 2.500e-170
Identity = 238/462 (51.52%), Postives = 331/462 (71.65%), Query Frame = 0 
Query:   24 VFTSEILKSVVESVGYDKPADEALQYLSENLTFVIKETIQEATKFRNKSKRKMLSPADIDHALKVRNIEPVYGFTNKHYVPFRHASGGGREIYFQEDVDIDLEDLMSQSLPKAPLEITLKSHWLAIDGIQPSIPENPPPIKKEMQLNEVVSPFSKSRHIKEVGVDKVGSLNKNSTKEGKKESKSDKRKAEELKKIADEKADSQKCKPLVTHELSVEQQMYYKELTEASVGSIETKRTEALQSLSNDPGLYQLLPRFITFISEGVRVNVAQHNLAILIYLLRMIKSLLENSTLYLEKYLHEVIPAVMTCIVSKQLCPRPDFDNHWALRDFAARLMAQICKHFNTPTNNIQPRITKSLSLSLDMEKAPLSTHYGALAGLSELGFEVIKSIVLPRIKSESGLIKEAINGN--NSAEKKAAEHLQALLVKHCTPVIFKTLSHGVVETQEQFVDKFGFVGNLIFQKV 483
            V  SE +K V ES+G  +  +E  Q L++ +++ IKE  Q+A KF +  KR+ L+ +DID+ALK++N+EP+YGF  + ++PFR ASGGGRE+YF E+ ++DL D+++  LP+ PL++ LK+HWL+I+G QP+IPENPPP  KE Q  E   P   ++     G ++ G L          + K  ++KA  L + A       + KP   HELSVEQQ+YYKE+TEA VGS E KR EALQS++ DPGLYQ+LPRF TFISEGVRVNV Q+NLA+LIYL+RM+K+L++N TLYLEKY+HE+IPAVMTCIVS+QLC RPD DNHWALRDFAARL+AQICKHF+T TNNIQ RITK+ + S   EK P +T YG++AGL+ELG +VIK+++LPR++ E   I+  ++G   ++ ++  A+H+Q+LL+KHC PV+ K       + Q+ +  +FG +G L+  +V
Sbjct:   13 VLPSESMKVVAESMGIAQIQEETCQLLTDEVSYRIKEIAQDALKFMHMGKRQKLTTSDIDYALKLKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLSDIINTPLPRVPLDVCLKAHWLSIEGCQPAIPENPPPAPKEQQKAEATEPLKSAKP----GQEEDGPLKGKGQGATTADGKGKEKKAPPLLEGA-----PLRLKPRSIHELSVEQQLYYKEITEACVGSCEAKRAEALQSIATDPGLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKYVHELIPAVMTCIVSRQLCLRPDVDNHWALRDFAARLVAQICKHFSTTTNNIQSRITKTFTKSWVDEKTPWTTRYGSIAGLAELGHDVIKTLILPRLQQEGERIRSVLDGPVLSNIDRIGADHVQSLLLKHCAPVLAKL--RPPPDNQDAYRAEFGSLGPLLCSQV 463
The following BLAST results are available for this feature:
BLAST of TCONS_00004919-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TAF62.500e-17051.52Transcription initiation factor TFIID subunit 6 OS... [more]
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