TCONS_00005130-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005130-protein
Unique NameTCONS_00005130-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length555

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005130-protein ID=TCONS_00005130-protein|Name=TCONS_00005130-protein|organism=Clytia hemisphaerica|type=polypeptide|length=555bp
FIVKKSTQNMSQPTTPTSPTPTSPTERGFKRCNSMTPEDFQRDWVRPDLP
STCKWHLGINNKESPHHHVEYPLKKDKILPTILKNIGNTPLVRLNRIPKD
HGLKCEVLVKCEFFNAGGSVKDRIGLRMVEEAEREGKIKPGVSTLIEPTS
GNTGIGIALAAAVKGYKCIIVMPEKMSMEKVNILRALGAEIVRTPTAASF
DAPESHIGVAQRLNQEIKNSIILDQYRNAGNPLAHYDGTAMEILDHCDGK
VDMFVAGAGTGGTLSGTARRLKEKCPNIKIVGVDPYGSLLAEPKELNDTS
VNYYEVEGIGYDFVPTVLDRTLVDKWIKTNDKETFIMARELIRKEGLLCG
GSSGTALTAAIEAAKDLKEGQRCVVILPDSIRNYMSKHLEDDWMAQRDFI
ELSPDNEKTWWWNEPLSRLNLNTPFTVSPNMTCQTAIEMMNRETYDQMPV
VNETGAVIGMITLGNLMQKMVSEKLTPESPVKEALYTNFHKVSLNTNLGK
LSRILDHEYYAVVVHTQQYYTDLNTSSEKEIIFGLATRMDLLNFITTQKP
RANSQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002923XLOC_002923Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005130TCONS_00005130Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000644CBS_dom
IPR001926TrpB-like_PLP-dep
IPR005857Cysta_beta_synth
IPR001216P-phosphate_BS
Vocabulary: Biological Process
TermDefinition
GO:0019343cysteine biosynthetic process via cystathionine
GO:0006535cysteine biosynthetic process from serine
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0004122cystathionine beta-synthase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006535 cysteine biosynthetic process from serine
biological_process GO:0019343 cysteine biosynthetic process via cystathionine
cellular_component GO:0005737 cytoplasm
molecular_function GO:0004122 cystathionine beta-synthase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000644CBS domainSMARTSM00116cbs_1coord: 423..471
e-value: 9.5E-5
score: 31.8
IPR000644CBS domainPFAMPF00571CBScoord: 423..470
e-value: 1.4E-9
score: 38.2
IPR000644CBS domainPROSITEPS51371CBScoord: 416..478
score: 12.328
NoneNo IPR availableGENE3D3.10.580.10coord: 403..555
e-value: 4.4E-22
score: 78.0
NoneNo IPR availableGENE3D3.40.50.1100coord: 115..223
e-value: 4.5E-39
score: 132.9
NoneNo IPR availableGENE3D3.40.50.1100coord: 224..393
e-value: 1.4E-51
score: 174.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availableCDDcd01561CBS_likecoord: 87..386
e-value: 1.88482E-161
score: 463.524
NoneNo IPR availableCDDcd04608CBS_pair_PALP_assoccoord: 421..545
e-value: 4.15934E-39
score: 138.227
NoneNo IPR availableSUPERFAMILY54631CBS-domain paircoord: 422..545
IPR001926Tryptophan synthase beta subunit-like PLP-dependent enzymePFAMPF00291PALPcoord: 84..379
e-value: 9.8E-66
score: 222.0
IPR001926Tryptophan synthase beta subunit-like PLP-dependent enzymeSUPERFAMILY53686Tryptophan synthase beta subunit-like PLP-dependent enzymescoord: 70..397
IPR005857Cystathionine beta-synthaseTIGRFAMTIGR01137TIGR01137coord: 79..545
e-value: 1.6E-197
score: 654.6
IPR001216Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment sitePROSITEPS00901CYS_SYNTHASEcoord: 110..128

Blast
[Close]
BLAST of TCONS_00005130-protein vs. Swiss-Prot (Human)
Match: CBS (Cystathionine beta-synthase OS=Homo sapiens GN=CBS PE=1 SV=2)

HSP 1 Score: 666.381 bits (1718), Expect = 0.000e+0
Identity = 311/518 (60.04%), Postives = 394/518 (76.06%), Query Frame = 0 
Query:   36 TPEDFQRD---WVRPDLPSTCKWHLGINNKESPHHHVEYPLKKDKILPTILKNIGNTPLVRLNRIPKDHGLKCEVLVKCEFFNAGGSVKDRIGLRMVEEAEREGKIKPGVSTLIEPTSGNTGIGIALAAAVKGYKCIIVMPEKMSMEKVNILRALGAEIVRTPTAASFDAPESHIGVAQRLNQEIKNSIILDQYRNAGNPLAHYDGTAMEILDHCDGKVDMFVAGAGTGGTLSGTARRLKEKCPNIKIVGVDPYGSLLAEPKELNDTSVNYYEVEGIGYDFVPTVLDRTLVDKWIKTNDKETFIMARELIRKEGLLCGGSSGTALTAAIEAAKDLKEGQRCVVILPDSIRNYMSKHLEDDWMAQRDFI-ELSPDNEKTWWWNEPLSRLNLNTPFTVSPNMTCQTAIEMMNRETYDQMPVVNETGAVIGMITLGNLMQKMVSEKLTPESPVKEALYTNFHKVSLNTNLGKLSRILDHEYYAVVVHTQQYYTDLNTSSEKEIIFGLATRMDLLNFITTQK 549
            +PED +     W+RPD PS C W LG    ESPHHH   P K  KILP ILK IG+TP+VR+N+I K  GLKCE+L KCEFFNAGGSVKDRI LRM+E+AER+G +KPG  T+IEPTSGNTGIG+ALAAAV+GY+CIIVMPEKMS EKV++LRALGAEIVRTPT A FD+PESH+GVA RL  EI NS ILDQYRNA NPLAHYD TA EIL  CDGK+DM VA  GTGGT++G AR+LKEKCP  +I+GVDP GS+LAEP+ELN T    YEVEGIGYDF+PTVLDRT+VDKW K+ND+E F  AR LI +EGLLCGGS+G+ +  A++AA++L+EGQRCVVILPDS+RNYM+K L D WM Q+ F+ E     +K WWW+  +  L L+ P TV P +TC   IE++  + +DQ PVV+E G ++GM+TLGN++  +++ K+ P   V + +Y  F ++ L   LG+LS IL+ +++A+VVH Q  Y     SS+++++FG+ T +DLLNF+  Q+
Sbjct:   32 SPEDKEAKEPLWIRPDAPSRCTWQLGRPASESPHHHTA-PAKSPKILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKPG-DTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKAAQELQEGQRCVVILPDSVRNYMTKFLSDRWMLQKGFLKEEDLTEKKPWWWHLRVQELGLSAPLTVLPTITCGHTIEILREKGFDQAPVVDEAGVILGMVTLGNMLSSLLAGKVQPSDQVGKVIYKQFKQIRLTDTLGRLSHILEMDHFALVVHEQIQYHSTGKSSQRQMVFGVVTAIDLLNFVAAQE 547
The following BLAST results are available for this feature:
BLAST of TCONS_00005130-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CBS0.000e+060.04Cystathionine beta-synthase OS=Homo sapiens GN=CBS... [more]
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