TCONS_00005898-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005898-protein
Unique NameTCONS_00005898-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length321

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005898-protein ID=TCONS_00005898-protein|Name=TCONS_00005898-protein|organism=Clytia hemisphaerica|type=polypeptide|length=321bp
MACISTNGSDLLAISLKNKLVIFRNDETILSYTHTPPVKPTDKEKKEDSE
EKKESKTAQPTPATSFDCHQFSSKRKSECQCYFGAVTEDKKLLVWNVEAT
KCTLLMTLEFPKRPTSLKFLKNEDSVLVSDKYGDIYKASLTSEEQTPKLI
LGHLSMVLDIEIIEEDKFIISADRDEKIRISHHPNAYNIHNYCLGHKNLV
SFIENIGNNRLLSISADKTIKLWNYYDGKELSSLDMKECTEKEFVPTKFV
TCDNSVLVIGEQLRGVVHLEINEDNLKYIRLIELDIQPVDICCTDCGKVY
MLCASPDQPLKVFTKSNNVSF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003364XLOC_003364Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005898TCONS_00005898Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom
IPR028884Trm82
IPR017986WD40_repeat_dom
IPR001680WD40_repeat
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0036265RNA (guanine-N7)-methylation
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0036265 RNA (guanine-N7)-methylation
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.10.670coord: 217..319
e-value: 4.0E-5
score: 22.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..67
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 1..216
e-value: 3.9E-15
score: 55.4
IPR028884tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit, Trm82HAMAPMF_03056TRM82coord: 9..319
score: 21.35
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 150..233
score: 11.445
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 80..313
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 193..233
score: 8.637

Blast
[Close]
BLAST of TCONS_00005898-protein vs. Swiss-Prot (Human)
Match: WDR4 (tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 OS=Homo sapiens GN=WDR4 PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 2.849e-34
Identity = 89/323 (27.55%), Postives = 160/323 (49.54%), Query Frame = 0 
Query:    4 ISTNGSDLLAISLKNKLVIFRNDETILSYTHTPPVKPTDKEKKEDSEEKKESKTAQPTPATSFDCHQFSSKRKSECQCYFGAVTEDKKLLVWNVEATKCTLLMTLEFPKRPTSLKFLKNEDSVLVSDKYGDIYKASLTSEEQTPKLILGHLSMVLDIEIIEEDKFIISADRDEKIRISHHPNAYNIHNYCLGHKNLVSFIENIGN--NRLLSISADKTIKLWNYYDGKELSSLDMKECTE-------KEFVPTK--FVTCDNSVLVI--GEQLRGVVHLEINEDNLKYIRLIELDIQPVDICCTDCGKVYMLCASPDQPLKVF 313
            +   GS  LA S+ +      +D+++  Y  +   K + + K ED+   + S       A++F          S+   YF    + K+L+++  +  +C  + T+   +R T+L F+ +E+ VLV+DK GD+Y  S+       +L LGHLSM+LD+ +  +D+FI++ADRDEKIR+S     ++I ++CLGH   VS I  +      LLS S D T++LW Y  G++L    +    E       ++F  ++  F   +N V ++  G  +  +  L+     L Y + +    Q  D+   +   +++L    + PL ++
Sbjct:   15 VVRGGSRFLATSIASS-----DDDSLFIYDCSAAEKKSQENKGEDAPLDQGSGA---ILASTF----------SKSGSYFALTDDSKRLILFRTKPWQCLSVRTVA--RRCTALTFIASEEKVLVADKSGDVYSFSVLEPHGCGRLELGHLSMLLDVAVSPDDRFILTADRDEKIRVSWAAAPHSIESFCLGHTEFVSRISVVPTQPGLLLSSSGDGTLRLWEYRSGRQLHCCHLASLQELVDPQAPQKFAASRIAFWCQENCVALLCDGTPVVYIFQLDARRQQLVYRQQLAFQHQVWDVAFEETQGLWVLQDCQEAPLVLY 317
The following BLAST results are available for this feature:
BLAST of TCONS_00005898-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR42.849e-3427.55tRNA (guanine-N(7)-)-methyltransferase non-catalyt... [more]
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