TCONS_00005969-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005969-protein
Unique NameTCONS_00005969-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length345

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005969-protein ID=TCONS_00005969-protein|Name=TCONS_00005969-protein|organism=Clytia hemisphaerica|type=polypeptide|length=345bp
IGLFKGNGSIPRKPECSIPRPVFGILPIITMTQTIDEINSNYLLKKNLTL
GYAIFDLCRESSIQRDILAITRFDHIAGIIGPEDFQVAQLVVPIMSLYYV
PMLSLNEIGLSIDRRHMFDVQHWIVPSIVDTADAVIDFVAEMDWNYVGIF
YQENKYGWSAAHSIKTSAMLRGVCVHDMIRFKTGTTIETYQNFLDFVVEN
TPLLKVFILMLQEAELIKFLNGLKMSKHINDITFLAMSSWGTKKIVVEGN
EAVSKGVITFQPYYPAELPSLSNFFHNREIFKSNLYKIYKLGYCNTDPYX
IFIKSINSDIVIQIFTTSGTQQNVKMMRYFLKISSVISHILMLTG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003402XLOC_003402Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005969TCONS_00005969Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000337GPCR_3
IPR001828ANF_lig-bd_rcpt
IPR028082Peripla_BP_I
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000337GPCR, family 3PRINTSPR00248GPCRMGRcoord: 24..39
score: 37.5
coord: 147..164
score: 25.69
coord: 39..58
score: 44.53
NoneNo IPR availableGENE3D3.40.50.2300coord: 23..309
e-value: 9.0E-21
score: 73.8
IPR001828Receptor, ligand binding regionPFAMPF01094ANF_receptorcoord: 30..281
e-value: 2.9E-23
score: 82.4
IPR028082Periplasmic binding protein-like ISUPERFAMILY53822Periplasmic binding protein-like Icoord: 19..282

Blast
[Close]
BLAST of TCONS_00005969-protein vs. Swiss-Prot (Human)
Match: GRM8 (Metabotropic glutamate receptor 8 OS=Homo sapiens GN=GRM8 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 3.725e-21
Identity = 72/303 (23.76%), Postives = 123/303 (40.59%), Query Frame = 0 
Query:    2 GLFKGNGSIPRKPECSIPRPVFGILPIITMTQTIDEINSNYLLKKNLTLGYAIFDLCRESS-------------IQRDILAI----------TRFDHIAGIIGPEDFQVAQLVVPIMSLYYVPMLSLNEIGLSIDRRHMFDVQHWIVPSIVDTADAVIDFVAEMDWNYVGIFYQENKYGWSAAHSI-KTSAMLRGVCVHDMIRFKTGTTIETYQNFLDFVVENTPLLKVFILMLQEAELIKFLNGLKMSKHINDITFLAMSSWGTKKIVVEGNEAVSKGVITFQPYYPAELPSLSNFFHNREI 280
            GLF  +    R   C   +   GI  +  M   ID+IN +  L  N+TLG  I D C   +             I++D   +          T+ D I+G+IG     V+ +V  I+ L+ +P +S       +     +D    +VP     A A++D V  + WNYV     E  YG S   +  + S  + GVC+    +         ++  +  ++E TP  +  I+   E ++ + L   K         ++   SWG+K   V   E +++G +T  P   A +     +F +R +
Sbjct:   50 GLFPVHAKGERGVPCGELKKEKGIHRLEAMLYAIDQINKDPDLLSNITLGVRILDTCSRDTYALEQSLTFVQALIEKDASDVKCANGDPPIFTKPDKISGVIGAAASSVSIMVANILRLFKIPQISYASTAPELSDNTRYDFFSRVVPPDSYQAQAMVDIVTALGWNYVSTLASEGNYGESGVEAFTQISREIGGVCIAQSQKIPREPRPGEFEKIIKRLLE-TPNARAVIMFANEDDIRRILEAAKKLNQSGHFLWIGSDSWGSKIAPVYQQEEIAEGAVTILPKR-ASIDGFDRYFRSRTL 350
The following BLAST results are available for this feature:
BLAST of TCONS_00005969-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GRM83.725e-2123.76Metabotropic glutamate receptor 8 OS=Homo sapiens ... [more]
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