TCONS_00006364-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00006364-protein
Unique Name	TCONS_00006364-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	394

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00006364-protein ID=TCONS_00006364-protein|Name=TCONS_00006364-protein|organism=Clytia hemisphaerica|type=polypeptide|length=394bp
KIHFEKKDRRKISRSNDKHDLAYQKRKRYIRICESLKIPIISIYIERLTT
PNLLLAHRGIGSRAMHGIALSLRHNTWVTNIDLTDNNLDKNAANSLAVMF
EDNHFIVRLNLTNNHIGQEGTERLLGALSYHTSIAYLSLSENRLPDKIAK
PLGEFLSVNNTLLELDLSKNELSTESGSTFKESLPMNRTLLDLDLSWNQF
RGQGAVDVAAGLAQNKSLVNVNLAWNGFSNIGSQAIGKCISMNKTLTQLD
LSHNRVGCKGLKEIGEALRTNTTLDVLRLGWNQLKSNSVNKVLIGCLENP
KHTIQSFHFESTLMNNENITNINKLIAKNPTLQFTHGGYSKEKAFDDNPE
DVRMQLLNILRTYLVDNRLRMVDLFNRWDKDKSYSLTHEEFRKG

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_003637	XLOC_003637	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00006364	TCONS_00006364	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001611	Leu-rich_rpt

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SMART	SM00368	LRR_RI_2	coord: 103..130 e-value: 2.7 score: 14.1 coord: 159..186 e-value: 2.2 score: 14.8 coord: 131..158 e-value: 35.0 score: 6.3 coord: 187..214 e-value: 1.8 score: 15.3 coord: 243..270 e-value: 3.1E-4 score: 30.1 coord: 215..242 e-value: 37.0 score: 6.1
None	No IPR available	GENE3D	3.40.50.2000		coord: 180..237 e-value: 5.3E-15 score: 55.2 coord: 45..119 e-value: 4.2E-11 score: 42.4 coord: 120..179 e-value: 2.4E-15 score: 56.3 coord: 238..372 e-value: 1.5E-13 score: 50.5
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 52..330
IPR001611	Leucine-rich repeat	PFAM	PF13516	LRR_6	coord: 103..120 e-value: 1.1 score: 9.4 coord: 187..206 e-value: 0.0042 score: 16.9 coord: 243..264 e-value: 0.0091 score: 15.9 coord: 159..178 e-value: 0.04 score: 13.9

Blast

[Close]

BLAST of TCONS_00006364-protein vs. Swiss-Prot (Human)
Match: LR74A (Leucine-rich repeat-containing protein 74A OS=Homo sapiens GN=LRRC74A PE=2 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 2.167e-47
Identity = 110/401 (27.43%), Postives = 204/401 (50.87%), Query Frame = 0

Query:    8 DRRKISRSNDKHDLAYQ---------KRKRYIRICESLKIPIISIYIERLTTPNLLLAHRGIGSRAMHGIALSLRHNTWVTNIDLTDNNLDKNAANSLAVMFEDNHFIVRLNLTNNHIGQEGTERLLGALSYHTS-IAYLSLSENRLPDKIAKPLGEFLSVNNTLLELDLSKNELSTESGSTFKESLPMNRTLLDLDLSWNQFRGQGAVDVAAGLAQNKSLVNVNLAWNGFSNIGSQAIGKCISMNKTLTQLDLSHNRVGCKGLKEIGEALRTNTTLDVLRLGWNQLKSNSVNKVLIGCLENPKHTIQSFHFESTLMNNENITNINKLIAKNPTLQFTHG---GYSKEKAFD--DNPEDVRMQLLNILRTYLVDNRLRMVDLFNRWDKDKSYSLTHEEFRK 393
            ++ K +R N + DL  +         +++ Y+  C+ + +  +S +I  +    + L H G+G R    IA++L  N  VT ++L DN + +    SL  M ++N+++  +N++NNH+G EG   +      ++S I  L LS N   +  A  L + LS N  + +LDLS N+ S   G    + L +N  L  LDLSWN F  +GAV +  GL  N +L  ++L+ NGF N  + A+G+ + +N+ L  LD+  N +G +G  +I + L +N +L VL+L  N +  +    +++    NPK  ++     + L++ + +  ++ + A +P L        G S +K      NP       + ++++Y   +++ +VD F   +   +  ++ +EF+K
Sbjct:   56 EKVKPARENSETDLEIEDDEKFFTTGQKELYLEACKLMGVVPVSYFIRNMEESYVNLNHHGLGPRGTKAIAIALVSNMAVTKLELEDNCIMEEGVLSLVEMLQENYYLQEMNISNNHLGLEGARIISDFFERNSSSIWSLELSGNDFKEDSAALLCQALSTNYQIKKLDLSHNQFSDVGGEHLGQMLAINVGLTSLDLSWNNFHTRGAVALCNGLRGNVTLTKLDLSMNGFGNEVALALGEVLRLNRCLVYLDIGGNDIGNEGASKISKGLESNESLRVLKLFLNPINMDGAILLILAIKRNPKSRMEELDISNVLVSEQFMKTLDGVYAVHPQLDVVFKAVQGLSPKKTIFLLTNP-------MKLIQSYADQHKITIVDFFKSLNPTGTMKMSVDEFQK 449

The following BLAST results are available for this feature:

BLAST of TCONS_00006364-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00006364-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
LR74A	2.167e-47	27.43	Leucine-rich repeat-containing protein 74A OS=Homo...	[more]

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TCONS_00006364-protein (polypeptide) - C. hemisphaerica