TCONS_00046080-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00046080-protein
Unique NameTCONS_00046080-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length548

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00046080-protein ID=TCONS_00046080-protein|Name=TCONS_00046080-protein|organism=Clytia hemisphaerica|type=polypeptide|length=548bp
MEKLTWFLVVGFGCLSVLNFVQYQEINSRFVELQQNSQGEKTRTRRDVAN
DEKEEWSSFFDQQKLINFIQKQSNQTIYKEVNQILKHFTSNFPAEKLCKD
LFKCEKEKCEDERRTVVTEDKTGNGKSRCLQGPPGPPGPPGPAGPGLEEP
KLVSSTLSHGQVNITKTKVFECKFYGNPIPDIEWKVPAKSFEVDSTVDKK
RFEITSHLTIHNVTWGEQGRVECSAKSLLGEAYESGNLTVLTKPQILSRE
TLVFAPEGITFDFPKCDVQANPPAKITWKRIFWPLPAGRFTVQGDNLKIS
NIQFKDEGFYVCEAENFLGKTKANIQLKVKAMEIEKSSPAFLKQEGGQVA
EIHCSAYGNSQRMSGKITRVGSSELIQEETTRTPNLISVKASVRGEGTYR
CTIRNNKSGKQVEAVTRVEKECGSGWTEYSGDCYAYINQKKTWYNAELYC
ISKGGHLASIKSKQENDFVYGLTPGGRNNYWIGLSDKQVEGSFTRWSDGK
TATYTNFENGQPNNSGNQDCVSFFEDAAEKWNDWGCSKSFTFVCKISQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029427XLOC_029427Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00046080TCONS_00046080Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001304C-type_lectin-like
IPR003598Ig_sub2
IPR003599Ig_sub
IPR013783Ig-like_fold
IPR013098Ig_I-set
IPR016186C-type_lectin-like/link
IPR018378C-type_lectin_CS
IPR007110Ig-like_dom
IPR016187CTDL_fold
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001304C-type lectin-likeSMARTSM00034CLECT_2coord: 422..545
e-value: 2.3E-35
score: 133.5
IPR001304C-type lectin-likePFAMPF00059Lectin_Ccoord: 439..545
e-value: 1.6E-22
score: 80.2
IPR001304C-type lectin-likePROSITEPS50041C_TYPE_LECTIN_2coord: 429..545
score: 24.551
IPR003598Immunoglobulin subtype 2SMARTSM00408igc2_5coord: 256..319
e-value: 8.5E-4
score: 28.6
coord: 163..230
e-value: 0.1
score: 16.6
IPR003599Immunoglobulin subtypeSMARTSM00409IG_3ccoord: 339..419
e-value: 37.0
score: 6.5
coord: 250..330
e-value: 2.3E-4
score: 30.5
coord: 157..241
e-value: 0.0015
score: 27.8
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 336..417
e-value: 4.8E-5
score: 23.0
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 269..335
e-value: 4.6E-13
score: 48.7
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 152..268
e-value: 2.2E-14
score: 53.0
IPR013098Immunoglobulin I-setPFAMPF07679I-setcoord: 253..329
e-value: 2.4E-9
score: 37.0
coord: 154..240
e-value: 8.1E-10
score: 38.5
IPR016186C-type lectin-like/link domainGENE3D3.10.100.10coord: 418..548
e-value: 2.0E-40
score: 137.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 113..151
NoneNo IPR availableCDDcd00096Igcoord: 169..235
e-value: 2.60658E-6
score: 44.4023
IPR018378C-type lectin, conserved sitePROSITEPS00615C_TYPE_LECTIN_1coord: 520..544
IPR007110Immunoglobulin-like domainPROSITEPS50835IG_LIKEcoord: 244..330
score: 9.264
IPR007110Immunoglobulin-like domainPROSITEPS50835IG_LIKEcoord: 150..239
score: 8.702
IPR007110Immunoglobulin-like domainSUPERFAMILY48726Immunoglobulincoord: 238..330
IPR007110Immunoglobulin-like domainSUPERFAMILY48726Immunoglobulincoord: 150..246
IPR016187C-type lectin foldSUPERFAMILY56436C-type lectin-likecoord: 417..546

Blast
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BLAST of TCONS_00046080-protein vs. Swiss-Prot (Human)
Match: CSPG2 (Versican core protein OS=Homo sapiens GN=VCAN PE=1 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 4.229e-23
Identity = 58/155 (37.42%), Postives = 77/155 (49.68%), Query Frame = 0 
Query:  393 VRGEGTYRCTIRNNKSGKQVEAVTRVEKECGSGWTEYSGDCYAYINQKKTWYNAELYCISKGGHLASIKSKQENDFVYGLTPGGRNNYWIGLSDKQVEGSFTRWSDGKTATYTNFENGQPNN--SGNQDCVSFFEDAAEKWNDWGCSKSFTFVCK 545
            V G  T+RC    +  G   E  T     C  GW ++ G CY Y   ++TW  AE  C  +G HL SI S +E  FV  +   G +  WIGL+DK  E  F RW+DG T  Y N+   QP++  S  +DCV        +WND  C+   T+ CK
Sbjct: 3143 VDGFNTFRCLCLPSYVGALCEQDTET---CDYGWHKFQGQCYKYFAHRRTWDAAERECRLQGAHLTSILSHEEQMFVNRV---GHDYQWIGLNDKMFEHDF-RWTDGSTLQYENWRPNQPDSFFSAGEDCVVIIWHENGQWNDVPCNYHLTYTCK 3290
The following BLAST results are available for this feature:
BLAST of TCONS_00046080-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CSPG24.229e-2337.42Versican core protein OS=Homo sapiens GN=VCAN PE=1... [more]
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