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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046080 ID=TCONS_00046080|Name=TCONS_00046080|organism=Clytia hemisphaerica|type=transcript|length=3077bpRun BLAST on NCBI protein sequence of TCONS_00046080-protein >TCONS_00046080-protein ID=TCONS_00046080-protein|Name=TCONS_00046080-protein|organism=Clytia hemisphaerica|type=polypeptide|length=548bp MEKLTWFLVVGFGCLSVLNFVQYQEINSRFVELQQNSQGEKTRTRRDVANRun BLAST on NCBI transcript from alignment at scaffold_105:747787..754878- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046080 ID=TCONS_00046080|Name=TCONS_00046080|organism=Clytia hemisphaerica|type=transcript|length=7092bp|location=Sequence derived from alignment at scaffold_105:747787..754878- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_105:747787..754878- >TCONS_00046080 ID=TCONS_00046080|Name=TCONS_00046080|organism=Clytia hemisphaerica|type=CDS|length=14823bp|location=Sequence derived from alignment at scaffold_105:747787..754878- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00046080 vs. Swiss-Prot (Human)
Match: CSPG2 (Versican core protein OS=Homo sapiens GN=VCAN PE=1 SV=3) HSP 1 Score: 102.834 bits (255), Expect = 6.266e-22 Identity = 58/155 (37.42%), Postives = 77/155 (49.68%), Query Frame = 3
Query: 2289 VRGEGTYRCTIRNNKSGKQVEAVTRVEKECGSGWTEYSGDCYAYINQKKTWYNAELYCISKGGHLASIKSKQENDFVYGLTPGGRNNYWIGLSDKQVEGSFTRWSDGKTATYTNFENGQPNN--SGNQDCVSFFEDAAEKWNDWGCSKSFTFVCK 2747
V G T+RC + G E T C GW ++ G CY Y ++TW AE C +G HL SI S +E FV + G + WIGL+DK E F RW+DG T Y N+ QP++ S +DCV +WND C+ T+ CK
Sbjct: 3143 VDGFNTFRCLCLPSYVGALCEQDTET---CDYGWHKFQGQCYKYFAHRRTWDAAERECRLQGAHLTSILSHEEQMFVNRV---GHDYQWIGLNDKMFEHDF-RWTDGSTLQYENWRPNQPDSFFSAGEDCVVIIWHENGQWNDVPCNYHLTYTCK 3290 The following BLAST results are available for this feature:
BLAST of TCONS_00046080 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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