TCONS_00046366-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00046366-protein
Unique NameTCONS_00046366-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length737

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00046366-protein ID=TCONS_00046366-protein|Name=TCONS_00046366-protein|organism=Clytia hemisphaerica|type=polypeptide|length=737bp
MSAVGADAEYMLERALEEMDDIFKDGDPHQTQHPFIKNSSTPVQNQHVKT
PSKSSKRKSAECSKNVIKMLDELEFFLSGQLDGSENFINSEEKEAILGYC
KKLSFVSLFFKELFKPSPKKNEPPLYPFNKVHTDLNNELTSTKLLHTQLT
ETQAELVKTKKSLVDYARKNEELLVRITEQRLAQEKTEKANHSDLLLPDE
DNREMDQLKNRIDTLLDEQEKKRPQEDSLSGLKARLREKASECSRLKIQL
EDMRQQQEAKDNTMIKIQEQIQRLFEENELLRQQLASATAMHSNGSTPHI
ATPRITNGMVPQTPESVRSASVQKSKSKEILQMKSGLKSASEPNLIRDGN
RSIGLVSPPSLSVNGDEAIYRPFRQLISDQPFTTWSLDQVQDWMRDEGLE
EYANNCSKCIKNGEDLIKFTSADFEKSLGISDPMIRKKLNLALKAITSNS
PDYAGRLDHNWVARWLDDLGLPQYKQNFYIHKVDGRVLVNMTLDDILQLK
VFNLLHHASLKRAVQFLRHQKFHPQFLREVANQSEERCDHVMLWTNQRIM
HWLRSVDLAEYAPNLRGSGVHGGLMVLEPRFNAETLANLLSIPNNKSLLR
RHVATQFMTLLGDACQRQKEMTAKTADFVPLNGSEKHKLRKKGGLNFGTL
RRRKSETDLETLICPMELDVSNIYSPPPALDPDNMFDLSENTSLSPSFTN
DNASNSTNDTSCTGPRIAELSQEIDQMTSMLGSDDNQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029597XLOC_029597Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00046366TCONS_00046366Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001660SAM
IPR013761SAM/pointed
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 236..291
NoneNo IPR availableGENE3D1.10.150.50coord: 380..454
e-value: 1.5E-13
score: 50.4
NoneNo IPR availableGENE3D1.10.150.50coord: 535..610
e-value: 8.6E-14
score: 51.0
NoneNo IPR availableGENE3D1.10.150.50coord: 457..533
e-value: 5.7E-14
score: 51.7
NoneNo IPR availableGENE3D1.20.1170.10coord: 55..342
e-value: 6.3E-6
score: 24.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..60
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 681..715
NoneNo IPR availableCDDcd09566SAM_liprin-beta1,2_repeat2coord: 456..518
e-value: 1.34248E-31
score: 117.025
NoneNo IPR availableCDDcd09569SAM_liprin-beta1,2_repeat3coord: 540..611
e-value: 8.6072E-43
score: 148.374
IPR001660Sterile alpha motif domainSMARTSM00454SAM_4coord: 454..520
e-value: 2.8E-12
score: 56.8
coord: 541..613
e-value: 0.0065
score: 25.7
coord: 382..449
e-value: 2.3E-8
score: 43.8
IPR001660Sterile alpha motif domainPFAMPF07647SAM_2coord: 543..610
e-value: 1.4E-12
score: 47.4
IPR001660Sterile alpha motif domainPFAMPF00536SAM_1coord: 384..444
e-value: 9.6E-10
score: 38.7
coord: 459..518
e-value: 6.8E-13
score: 48.8
IPR001660Sterile alpha motif domainPROSITEPS50105SAM_DOMAINcoord: 462..520
score: 13.86
IPR001660Sterile alpha motif domainPROSITEPS50105SAM_DOMAINcoord: 385..449
score: 13.298
IPR013761Sterile alpha motif/pointed domainSUPERFAMILY47769SAM/Pointed domaincoord: 456..523
IPR013761Sterile alpha motif/pointed domainSUPERFAMILY47769SAM/Pointed domaincoord: 376..447
IPR013761Sterile alpha motif/pointed domainSUPERFAMILY47769SAM/Pointed domaincoord: 540..586

Blast
[Close]
BLAST of TCONS_00046366-protein vs. Swiss-Prot (Human)
Match: LIPB1 (Liprin-beta-1 OS=Homo sapiens GN=PPFIBP1 PE=1 SV=2)

HSP 1 Score: 317.775 bits (813), Expect = 2.684e-95
Identity = 185/436 (42.43%), Postives = 249/436 (57.11%), Query Frame = 0 
Query:  311 PQTPESVRSASVQKSKSKEILQMKSGLKSA----------SEPNLIRDGNRSIGLVSPPSLSVNGDEAIYRPFRQLISDQPFTTWSLDQVQDWMRDEGLEEYANNCSKCIKNGEDLIKFTSADFEKSLGISDPMIRKKLNLALKAITSNSPDYAGRLDHNWVARWLDDLGLPQYKQNFYIHKVDGRVLVNMTLDDILQLKVFNLLHHASLKRAVQFLRHQKFHPQFL-REVANQSEERCDHVMLWTNQRIMHWLRSVDLAEYAPNLRGSGVHGGLMVLEPRFNAETLANLLSIPNNKSLLRRHVATQFMTLLGDACQRQKEMTAKTADFVPLNGSEKHKLRKKGGLNFGTLRRRKSETDLETLICPMELDVSNIYSPPPALDPDNMFDLSENTSLSPSFTNDNASNSTNDTSCTGPRIAELSQEIDQMTSMLGSDD 735
            P +P+S       K KS+ I+++   L+ +          SEP   R G R+    + P L  + D  + +    L  D PF  W+ +QV +W+ ++GL  Y N+    I +G+ L++ +  D EK LGI   + RKKL LAL+A+ S      G+LD NWV RWLDD+GLPQYK  F   +VDGR+L  MT+DD+L LKV ++LHH S+KRA+Q LR   F P  L R  ++++      V  WTN R+M WLRSVDLAEYAPNLRGSGVHGGLMVLEPRFN ET+A LL+IP NK+LLRRH+AT F  L+G   Q QK    +  D+V L  + K K +K    NFG LR++K E D E  +CPMEL  ++  +      P     L E   L       +      D+  T  +I   S+ I+ +T ML  DD
Sbjct:  577 PPSPDS-------KKKSRGIMKLFGKLRRSQSTTFNPDDMSEPEFKRGGTRA---TAGPRLGWSRD--LGQSNSDL--DMPFAKWTKEQVCNWLMEQGLGSYLNSGKHWIASGQTLLQASQQDLEKELGIKHSLHRKKLQLALQALGSEEETNHGKLDFNWVTRWLDDIGLPQYKTQFDEGRVDGRMLHYMTVDDLLSLKVVSVLHHLSIKRAIQVLRINNFEPNCLRRRPSDENTIAPSEVQKWTNHRVMEWLRSVDLAEYAPNLRGSGVHGGLMVLEPRFNVETMAQLLNIPPNKTLLRRHLATHFNLLIGAEAQHQKRDAMELPDYVLLTATAKVKPKKLAFSNFGNLRKKKQE-DGEEYVCPMELGQASGSASKKGFKPGLDMRLYEEDDL-------DRLEQMEDSEGTVRQIGAFSEGINNLTHMLKEDD 990
The following BLAST results are available for this feature:
BLAST of TCONS_00046366-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LIPB12.684e-9542.43Liprin-beta-1 OS=Homo sapiens GN=PPFIBP1 PE=1 SV=2[more]
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