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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046366 ID=TCONS_00046366|Name=TCONS_00046366|organism=Clytia hemisphaerica|type=transcript|length=3329bpRun BLAST on NCBI protein sequence of TCONS_00046366-protein >TCONS_00046366-protein ID=TCONS_00046366-protein|Name=TCONS_00046366-protein|organism=Clytia hemisphaerica|type=polypeptide|length=737bp MSAVGADAEYMLERALEEMDDIFKDGDPHQTQHPFIKNSSTPVQNQHVKTRun BLAST on NCBI transcript from alignment at scaffold_109:144365..163508+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046366 ID=TCONS_00046366|Name=TCONS_00046366|organism=Clytia hemisphaerica|type=transcript|length=19144bp|location=Sequence derived from alignment at scaffold_109:144365..163508+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_109:144365..163508+ >TCONS_00046366 ID=TCONS_00046366|Name=TCONS_00046366|organism=Clytia hemisphaerica|type=CDS|length=37638bp|location=Sequence derived from alignment at scaffold_109:144365..163508+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00046366 vs. Swiss-Prot (Human)
Match: LIPB1 (Liprin-beta-1 OS=Homo sapiens GN=PPFIBP1 PE=1 SV=2) HSP 1 Score: 311.227 bits (796), Expect = 4.181e-89 Identity = 183/436 (41.97%), Postives = 249/436 (57.11%), Query Frame = 1
Query: 1189 PQTPESVRSASVQKSKSKEILQMKSGLKSA----------SEPNLIRDGNRSIGLVSPPSLSVNGDEAIYRPFRQLISDQPFTTWSLDQVQDWMRDEGLEEYANNCSKCIKNGEDLIKFTSADFEKSLGISDPMIRKKLNLALKAITSNSPDYAGRLDHNWVARWLDDLGLPQYKQNFYIHKVDGRVLVNMTLDDILQLKVFNLLHHASLKRAVQFLRHQKFHPQFL-REVANQSEERCDHVMLWTNQRIMHWLRSVDLAEYAPNLRGSGVHGGLMVLEPRFNAETLANLLSIPNNKSLLRRHVATQFMTLLGDACQRQKEMTAKTADFVPLNGSEKHKLRKKGGLNFGTLRRRKSETDLETLICPMELDVSNIYSPPPALDPDNMFDLSENTSLSPXXXXXXXXXXXXXXXXXGPRIAELSQEIDQMTSMLGSDD 2463
P +P+S K KS+ I+++ L+ + SEP R G R+ + P L + D + + L D PF W+ +QV +W+ ++GL Y N+ I +G+ L++ + D EK LGI + RKKL LAL+A+ S G+LD NWV RWLDD+GLPQYK F +VDGR+L MT+DD+L LKV ++LHH S+KRA+Q LR F P L R ++++ V WTN R+M WLRSVDLAEYAPNLRGSGVHGGLMVLEPRFN ET+A LL+IP NK+LLRRH+AT F L+G Q QK + D+V L + K K +K NFG LR++K E D E +CPMEL ++ + P L E L +++ + +I S+ I+ +T ML DD
Sbjct: 577 PPSPDS-------KKKSRGIMKLFGKLRRSQSTTFNPDDMSEPEFKRGGTRA---TAGPRLGWSRD--LGQSNSDL--DMPFAKWTKEQVCNWLMEQGLGSYLNSGKHWIASGQTLLQASQQDLEKELGIKHSLHRKKLQLALQALGSEEETNHGKLDFNWVTRWLDDIGLPQYKTQFDEGRVDGRMLHYMTVDDLLSLKVVSVLHHLSIKRAIQVLRINNFEPNCLRRRPSDENTIAPSEVQKWTNHRVMEWLRSVDLAEYAPNLRGSGVHGGLMVLEPRFNVETMAQLLNIPPNKTLLRRHLATHFNLLIGAEAQHQKRDAMELPDYVLLTATAKVKPKKLAFSNFGNLRKKKQE-DGEEYVCPMELGQASGSASKKGFKPGLDMRLYEEDDLDRLEQMEDSEGTVR-------QIGAFSEGINNLTHMLKEDD 990 The following BLAST results are available for this feature:
BLAST of TCONS_00046366 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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