TCONS_00046528-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00046528-protein
Unique Name	TCONS_00046528-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	556

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00046528-protein ID=TCONS_00046528-protein|Name=TCONS_00046528-protein|organism=Clytia hemisphaerica|type=polypeptide|length=556bp
XTTEMTFFSHQQGIQSIPQFVSPKSQRSTGSLQYDKIIQDMEKILLGDRE
ITPVTPVDKRFACPLCGKLMQNPLQTDRGMVACTSCYEDRRREIGSEICP
LDGEKIEHDSFTRLDKFMVREISKIQVQCFYEECKWKGALNDINRHEETD
CQYARTECDICRQKVLKKQFAEHRAKDCTGNYDVEMEETYDTEETKMKSK
FKCPSCGKEVESSNSHNHWKDCQGTKCPYEQFGCKNTYGRSAKEHEEHIS
NYHSYDHCVLEFVQGVLEENKNLDSRIMQMTRDKQTMDRKFSSLHNDYQI
LQNKCKELLEKSQKKDRDINLLESKFQKLYNVVSDLEQNQYEKKESELKN
IVGNLSTKGNALFDITKLSESEELIRKVESDQAMLSANLADTNLKVKLLE
HRSTNGTLIYRLENFTHRLEQARQGKIFALHSPPCFTSPNGYKFCLRVYL
NGDGMGQGTHISIYFVLMRNHYDNLLEWPFQKKISIRMINHKSRQNDKRE
TFNTDKTSTSFRKPDKEMNMAAGCPKFLDLSSLLNGGYLADDSIFIEVKV
EDPVKR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_029698	XLOC_029698	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00046528	TCONS_00046528	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002083	MATH/TRAF_dom
IPR012227	TNF_rcpt--assoc_TRAF
IPR013083	Znf_RING/FYVE/PHD
IPR008974	TRAF-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

Vocabulary: **Biological Process**
Term	Definition
GO:0042981	regulation of apoptotic process
GO:0007165	signal transduction

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042981	regulation of apoptotic process
biological_process	GO:0007165	signal transduction
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 291..339
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 54..112
IPR002083	MATH/TRAF domain	SMART	SM00061	math_3	coord: 407..533 e-value: 0.0015 score: 27.8
IPR002083	MATH/TRAF domain	PROSITE	PS50144	MATH	coord: 405..550 score: 19.112
IPR012227	TNF receptor-associated factor TRAF	PIRSF	PIRSF015614	TRAF	coord: 33..555 e-value: 6.0E-80 score: 267.2
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 54..124 e-value: 3.0E-6 score: 26.2
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 125..173 e-value: 3.2E-9 score: 36.3 coord: 193..249 e-value: 0.011 score: 15.4
IPR008974	TRAF-like	GENE3D	2.60.210.10		coord: 338..555 e-value: 3.9E-32 score: 111.0
IPR008974	TRAF-like	SUPERFAMILY	49599	TRAF domain-like	coord: 124..179
IPR008974	TRAF-like	SUPERFAMILY	49599	TRAF domain-like	coord: 405..552

Blast

[Close]

BLAST of TCONS_00046528-protein vs. Swiss-Prot (Human)
Match: TRAF3 (TNF receptor-associated factor 3 OS=Homo sapiens GN=TRAF3 PE=1 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 1.411e-59
Identity = 156/533 (29.27%), Postives = 261/533 (48.97%), Query Frame = 0

Query:   54 VTPVDKRFACPLCGKLMQNPLQTDRGMVACTSCYEDRRREIGSEICPLDGEKIEHDSFTRLDKFMVREISKIQVQCFYEE--CKWKGALNDINRHEETDCQYARTEC--DICRQKVLKKQFAEHRAKDC-------------TGNYDVEMEETYDTEETKMKSKFKCPSCGKEVESSNSHNHWKDC--QGTKCPYEQFGCK-NTYGRSAKEHEEHISNYHSYDHCVLEFVQGVLEENKNLDSRIMQMTRDKQTMDRKFSSLHN---DYQILQNKCKELLEKSQKK----DRDINLLESKFQKLYNVVSDLEQNQYEKKESELKNIVGNLSTKGNALFDITK----LSESEELIR-KVESDQAMLSAN---LADTNLKVKLLEHRSTNGTLIYRLENFTHRLEQARQGKIFALHSPPCFTSPNGYKFCLRVYLNGDGMGQGTHISIYFVLMRNHYDNLLEWPFQKKISIRMINHKSRQNDKRETFNTDKTSTSFRKPDKEMNMAAGCPKFLDLSSLLNGGYLADDSIFIEVKVE 551
            V  V+ ++ C  C  ++ +P QT+ G   C SC         S  C    E I  D   + D    REI  +Q+ C  E   C  +  L  +  H + DC +    C    C++KVL+K   +H  K C                  ++  E  D     +    KC    + +  S    H  +C    + C ++++GC      +  K HE   +  H         V  + E + +L+ ++  +  +    ++   SLHN    ++I   + KE+L  ++ K     R I+    K ++L   +    QN +E+ +S +K+ V +L  +   L  + K    ++ +  L+  ++     MLS +   LAD +L+ ++LE  S NG LI+++ ++  R ++A  GK  +L+S P +T   GYK C RVYLNGDGMG+GTH+S++FV+MR  YD LL WPF++K+++ +++  S +    + F  D  S+SF+KP  EMN+A+GCP F+  + L NG Y+ DD+IFI+V V+
Sbjct:   44 VKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSS-SSPKCTACQESIVKDKVFK-DNCCKREILALQIYCRNESRGCAEQLMLGHLLVHLKNDCHFEELPCVRPDCKEKVLRKDLRDHVEKACKYREATCSHCKSQVPMIALQKHEDTDCPCVVVSCPHKCSV--QTLLRSELSAHLSECVNAPSTCSFKRYGCVFQGTNQQIKAHEASSAVQH---------VNLLKEWSNSLEKKVSLLQNESVEKNKSIQSLHNQICSFEIEIERQKEMLRNNESKILHLQRVIDSQAEKLKELDKEIRPFRQN-WEEADS-MKSSVESLQNRVTELESVDKSAGQVARNTGLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVD 561

The following BLAST results are available for this feature:

BLAST of TCONS_00046528-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00046528-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TRAF3	1.411e-59	29.27	TNF receptor-associated factor 3 OS=Homo sapiens G...	[more]

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TCONS_00046528-protein (polypeptide) - C. hemisphaerica