TCONS_00046528 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046528
Unique NameTCONS_00046528
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1966

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046528 ID=TCONS_00046528|Name=TCONS_00046528|organism=Clytia hemisphaerica|type=transcript|length=1966bp
GNCACAACAGAAATGACATTCTTTTCTCATCAACAAGGTATCCAATCTAT
TCCACAATTTGTTTCGCCGAAATCACAAAGATCAACTGGCTCCTTACAGT
ACGACAAAATAATACAAGATATGGAAAAAATTCTTCTTGGGGATAGAGAA
ATCACTCCTGTTACACCCGTTGATAAACGCTTTGCTTGTCCACTATGTGG
AAAACTTATGCAAAATCCACTGCAGACTGACAGAGGAATGGTGGCCTGTA
CCTCATGCTATGAAGATAGACGCAGAGAAATAGGCTCTGAAATATGTCCA
CTTGATGGGGAAAAAATTGAAcatgacagttttacaagactAGATAAATT
CATGGTCAGAGAAATATCCAAAATCCAAGTCCAGTGTTTTTATGAAGAAT
GTAAATGGAAAGGAGCACTCAATGATATAAATAGACATGAAGAAACAGAC
TGTCAATATGCAAGAACTGAATGCGATATTTGTAGGCAGAAAGTTCTCAA
GAAACAATTTGCAGAACATAGAGCAAAAGATTGCACTGGAAATTACGATG
TTGAAATGGAGGAAACTTATGATACTGAGGAaaccaaaatgaaatcaaaa
tttaaatgtCCAAGTTGTGGAAAAGAAGTTGAATCATCGAACTCTCATAA
CCATTGGAAAGATTGCCAAGGTACAAAATGTCCTTATGAACAATTTGGGT
GCAAAAATACCTATGGCAGAAGTGCTAAGGAACATGAAGAACATATTTCA
AATTACCATAGCTATGATCATTGTGTATTAGAATTTGTTCAAGGTGTAtt
ggaagaaaataaaaaccttGATAGCAGGATAATGCAAATGACAAGAGATA
AACAAACAATGGATAGGAAATTCTCATCTTTACACAATGATTATCAAATC
CTACAAAACAAATGCAAGGAACTTTTAGAGAAGTCTCAAAAGAAAGATAG
GGATATTAATCTTCTTgaatctaaatttcaaaaactttataatgTTGTTA
GTGATCTGGAACAAAATCAATAtgagaaaaaagaaagtgaaCTCAAGAAT
ATTGTAGGGAACTTATCAACAAAAGGAAATGCACTTTTTGACATTACTAA
ATTGAGCGAAAGTGAAGAATTAATAAGAAAAGTTGAAAGCGACCAAGCTA
TGTTAAGTGCAAATTTAGCAGATACAAACCTCAAAGTGAAACTTTTAGAG
CATCGCTCCACAAATGGTACATTGATATATAGGCTGGAAAACTTTACCCA
CAGACTTGAACAAGCACGCCAAGGAAAAATTTTTGCATTGCATTCACCAC
CATGCTTTACTTCCCCAAACGGTTATAAATTTTGTTTACGAGTTTACCTT
AATGGTGATGGCATGGGCCAAGGAACACATATCTCAATATACTTTGTTTT
AATGAGAAATCACTACGATAACCTCCTTGAATGGCCGttccaaaagaaaa
tttcaatcagAATGATTAATCATAAAAGCCGACAAAATGATAAGAGAGAA
ACTTTTAATACCGATAAAACTTCCACATCCTTCCGTAAACCTGATAAAGA
AATGAACATGGCGGCAGGATGCCCCAAATTCCTTGATTTGAGTAGTTTAT
TAAATGGGGGTTACTTGGCGGATGACTCCATTTTCATTGAAGTAAAAGTT
GAAGATCCTGTCAAAAGATGATTATGGGTGATAAATAATACTcaaaaata
atgataataattaTCACCTTTATGACAATgttgatttgaaatttccattg
atttgaaaataagcAATATCCTCAAGGCAAGACTGTTTCATGATCACAGA
ATTATGATTTGGCAATTCAAATATTcgTTTGCAATTCGTATTGCATCTCA
ACTTTTGAGAAGAGACCGGTATTTAAAAGCGATCTTAAATGAGACCTGAA
GAGACCGTGTAAATATACTAGCACTGAATGCGATATTGGCAAGCAGAAAG
CTCTCAAGAAAAGCAG
Run BLAST on NCBI

protein sequence of TCONS_00046528-protein

>TCONS_00046528-protein ID=TCONS_00046528-protein|Name=TCONS_00046528-protein|organism=Clytia hemisphaerica|type=polypeptide|length=556bp
XTTEMTFFSHQQGIQSIPQFVSPKSQRSTGSLQYDKIIQDMEKILLGDRE
ITPVTPVDKRFACPLCGKLMQNPLQTDRGMVACTSCYEDRRREIGSEICP
LDGEKIEHDSFTRLDKFMVREISKIQVQCFYEECKWKGALNDINRHEETD
CQYARTECDICRQKVLKKQFAEHRAKDCTGNYDVEMEETYDTEETKMKSK
FKCPSCGKEVESSNSHNHWKDCQGTKCPYEQFGCKNTYGRSAKEHEEHIS
NYHSYDHCVLEFVQGVLEENKNLDSRIMQMTRDKQTMDRKFSSLHNDYQI
LQNKCKELLEKSQKKDRDINLLESKFQKLYNVVSDLEQNQYEKKESELKN
IVGNLSTKGNALFDITKLSESEELIRKVESDQAMLSANLADTNLKVKLLE
HRSTNGTLIYRLENFTHRLEQARQGKIFALHSPPCFTSPNGYKFCLRVYL
NGDGMGQGTHISIYFVLMRNHYDNLLEWPFQKKISIRMINHKSRQNDKRE
TFNTDKTSTSFRKPDKEMNMAAGCPKFLDLSSLLNGGYLADDSIFIEVKV
EDPVKR
Run BLAST on NCBI

transcript from alignment at scaffold_113:187084..191714-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046528 ID=TCONS_00046528|Name=TCONS_00046528|organism=Clytia hemisphaerica|type=transcript|length=4631bp|location=Sequence derived from alignment at scaffold_113:187084..191714- (Clytia hemisphaerica)
GNCACAACAGAAATGACATTCTTTTCTCATCAACAAGGTACTTTTATTCA
GGCCGTATTTTACTGGTTTTTACCTTTACTGTATATGTTTTGCGGTTCAA
ACGATTTTTCATATGATGGATAAATTCTCAATTATGTATTGTTCTATGTC
AGGTATCCAATCTATTCCACAATTTGTTTCGCCGAAATCACAAAGATCAA
CTGGCTCCTTACAGTACGACAAGTAAGCAGATTTTTTTAATTTCAATTTT
TTTCATTTTTTGTATTAAAATGTCTCTATATATTTTGTTCAAAAAATTAG
ANAATTTTTTTCATTTTTTGTATTAAAATGTCTCTTTATATTTTGTTCAA
AAAATTAGGTTAAAAAGTAGAACTCTAAAAAGTACAACACTCGCGAATCT
CGAAAAGGATAATTCCAGATTTCAGTATTTTGATATTTTGAAAGTCTATA
ATTTCCCAAAGGATGGCTCTTCGGTTTTCCCCTTTGATGGTTAAATGGAA
ATTTTGCCGAGGCGCCATCTTATGATGACGTATCCGATAGCCAATCAAAT
GAGCGAGAGAATAAAGGGAAACTCCAAAGTTTTGTTTTGAAAATCAAACC
GAAAGTTCTTTTTTTTTGACGTTTTGCACTTGGGTTTTTTCAAATGAACT
TTGCTGGATGATGGTTTTTATTTTTTTTGGAGTTCTTCCAGGAATTGTTT
AAATTCTAAAAATAGGATCTTCTTTTTTAGAATAATACAAGATATGGAAA
AAATTCTTCTTGGGGATAGAGAAATCACTCCTGTTACACCCGTTGATAAA
CGCTTTGCTTGTCCACTATGTGGAAAACTTATGCAAAATCCACTGCAGAC
TGACAGAGGTACAATACACCTTTCCCGTAATTCAAATTTCTCAGAAATGG
CCCGGGAAAATGTGCGCTCCACCGTTGTGTATAAAATTGTTTAGGAGGTA
AAAAACGCGTTTTTGCCTGCGAGGGGTTAGGGAAAGTGGGATTTTAGCCT
CTAACTTTTGACAGCGACCTTCTTTTGGCAAAATATTTTCAGGGTGGTAT
AATATCATGAATAGATTGAACATACTAAAATTTGAGGGGATTTTGTTCGA
CAGAACTTATGAAAAGCTCAAAAAACCAACTTTCCCTAAGGGAACGCAGG
CAAAAACGGGTTTGTTTACCTCCAGAGACCAAACGGTGGAGAGCATCAAA
ATAATGCGCGCGCATTAGTTTTACGAATTACGGGAAAGGTGTATTCCTTT
ATAAATTACCAGGTTGCATGTTACTTCAAGTTCTGTAGCATTACTTTATA
AGCGGCCTAGTCAATTCCATTTTTAATCATACCAACCATGTCAAAGTCAA
AGATATGATAATTATATCTGGATAGCTTCAACTCTTGGGCCTTGTCGTTC
AGAGTCTTGTTTGACAGATATCCTTGCCTTGTTTTGAAGTAGATATTAGC
TATTGTATTGTTTGTAATTTATATTTTTTAGACCTTTATATTAATCAAGA
TGTCCTGAAAACCTTCAATTACCCCCTTGAAAAATCTAAGATTTGACCCC
CAACTCGGGAAAAGTTTGTTGACAGTAATACACCCCTGTATGGTTTTTAA
AATGAAATACGCGTTGTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNAACTTGTTTTCTTATTCTCAGCCTGAG
CAGTTCCTTAACAATTCCTTATTTTTTGGACCATTTTCAGCCTCGAGTTC
CTTATAAACGTGTTTCTTATAAAAAAAAAACGTGTAGCCTAATGCATAAT
TATAATAGTGCACAAATTTTCCTCTCATCATTGTTTTGGTGTTTGAATTT
TTAATTATTCAGTATAACATTGTGGTAAACAAAAGGTCTACTGATTTTTT
TAAAGGAATGGTGGCCTGTACCTCATGCTATGAAGATAGACGCAGAGAAA
TAGGCTCTGAAATATGTCCACTTGATGGGGAAAAAATTGAACATGACAGT
TTTACAAGACTAGATAAATTCATGGTCAGAGAAATATCCAAAATCCAAGT
CCAGTGTTTTTATGAAGAATGTAAATGGAAAGGAGCACTCAATGATATAA
ATGTAAATATGCTCATTTCAGTTAAACGTCTTTACAATGTTTTGAATACT
ACACTTAACATAAGTTTGTCTAATTTCGTCATATCTCATCTAATTCTGAC
TACCCTTTTTTAGAGTTGAGAACAAAAGAAAGGTCAAAATTGCTGATTGA
CTTGCTTAGCAGTAAAGGGGAAGAAATCTATTTTAATCGGTGATTCTGAC
CTTCCTATTATTCCCATCTCTAAAGAAGGGTGTCGAAATTAGATGCGGCA
TGTCGGTCGGGTGTAATTTCTATTTCTATCCATTTATTTTCATAAGCCTA
AAAAAGCTAACATCGCAAATAGAGACCAACTTAAGGTAGTAACATTGAAA
ATTTAGTAACATCATATTTTTTGAAAGATTTTGTCACTATTGTCAATTCT
CAGATTTTAAATATTTGCTATTAATACCTTTTATTTCCAGAGACATGAAG
AAACAGACTGTCAATATGCAAGAACTGAATGCGATATTTGTAGGCAGAAA
GTTCTCAAGAAACAATTTGCAGAACATAGAGCAAAAGATTGCACTGGAAA
TTACGATGTTGAAATGGAGGTAAGTAATTAAGGACATTTCATTTAAAGTT
GTTTGCTGGTGGACCTGTTGATGCTTTTGAAAGAAGGTTTTGGCTCTTTT
GAAATTTGATTATATACTTTAAAAGCTCTACTTTGATTCTTTGAAACTCA
AGTTCTCTTCTTTGTTGATTGCATGTTATTGATTTTGTTATGTTCCATTT
TCAGGAAACTTATGATACTGAGGAAACCAAAATGAAATCAAAATTTAAAT
GTCCAAGTTGTGGAAAAGAAGTTGAATCATCGAACTCTCATAACCATTGG
AAAGATTGCCAAGGTACAAAATGTCCTTATGAACAATTTGGGTGCAAAAA
TACCTATGGCAGAAGTGCTAAGGAACATGAAGAACATATTTCAAATTACC
ATAGCTATGATCATTGTGTATTAGAATTTGTTCAAGGTGTATTGGAAGAA
AATAAAAACCTTGATAGCAGGATAATGCAAATGACAAGAGATAAACAAAC
AATGGATAGGAAATTCTCATCTTTACACAATGATTATCAAATCCTACAAA
ACAAATGCAAGGAACTTTTAGAGAAGTCTCAAAAGAAAGATAGGGATATT
AATCTTCTTGAATCTAAATTTCAAAAACTTTATAATGTTGTTAGTGATCT
GGAACAAAATCAATATGAGAAAAAAGAAAGTGAACTCAAGAATATTGTAG
GGAACTTATCAACAAAAGGAAATGCACTTTTTGACATTACTAAATTGAGC
GAAAGTGAAGAATTAATAAGAAAAGTTGAAAGCGACCAAGCTATGTTAAG
TGCAAATTTAGCAGATACAAACCTCAAAGTGAAACTTTTAGAGCATCGCT
CCACAAATGGTACATTGATATATAGGCTGGAAAACTTTACCCACAGACTT
GAACAAGCACGCCAAGGAAAAATTTTTGCATTGCATTCACCACCATGCTT
TACTTCCCCAAACGGTTATAAATTTTGTTTACGAGTTTACCTTAATGGTG
ATGGCATGGGCCAAGGAACACATATCTCAATATACTTTGTTTTAATGAGA
AATCACTACGATAACCTCCTTGAATGGCCGTTCCAAAAGAAAATTTCAAT
CAGAATGATTAATCATAAAAGCCGACAAAATGATAAGAGAGAAACTTTTA
ATACCGATAAAACTTCCACATCCTTCCGTAAACCTGATAAAGAAATGAAC
ATGGCGGCAGGATGCCCCAAATTCCTTGATTTGAGTAGTTTATTAAATGG
GGGTTACTTGGCGGATGACTCCATTTTCATTGAAGTAAAAGTTGAAGATC
CTGTCAAAAGATGATTATGGGTGATAAATAATACTCAAAAATAATGATAA
TAATTATCACCTTTATGACAATGTTGATTTGAAATTTCCATTGATTTGAA
AATAAGCAATATCCTCAAGGCAAGACTGTTTCATGATCACAGAATTATGA
TTTGGCAATTCAAATATTGTAAGTATTATCTAAAAAGTTTTTAAACATCT
TGTCTGTTGATTCTAGTTTTAACAAGATGGATATTTTTTCAGTTAGTGAG
CGTTTTCTCATTTCTTTATCAAACGTTACTGTTCCGAATCCTAAATATAT
CACTTACTCCTATAGATAAAACTGTGTTTCTTTTTTTCAGCGTTTGCAAT
TCGTATTGCATCTCAACTTTTGAGAAGAGACCGGTATTTAAAAGCGATCT
TAAATGAGACCTGAAGAGACCGTGTAAATATACTAGCACTGAATGCGATA
TTGGCAAGCAGAAAGCTCTCAAGAAAAGCAG

Coding sequence (CDS) from alignment at scaffold_113:187084..191714-

>TCONS_00046528 ID=TCONS_00046528|Name=TCONS_00046528|organism=Clytia hemisphaerica|type=CDS|length=10026bp|location=Sequence derived from alignment at scaffold_113:187084..191714- (Clytia hemisphaerica)
GAAACTTATGATACTGAGGAAACCAAAATGAAATCAAAATTTAAATGTCC
AAGTTGTGGAAAAGAAGTTGAATCATCGAACTCTCATAACCATTGGAAAG
ATTGCCAAGGTACAAAATGTCCTTATGAACAATTTGGGTGCAAAAATACC
TATGGCAGAAGTGCTAAGGAACATGAAGAACATATTTCAAATTACCATAG
CTATGATCATTGTGTATTAGAATTTGTTCAAGGTGTATTGGAAGAAAATA
AAAACCTTGATAGCAGGATAATGCAAATGACAAGAGATAAACAAACAATG
GATAGGAAATTCTCATCTTTACACAATGATTATCAAATCCTACAAAACAA
ATGCAAGGAACTTTTAGAGAAGTCTCAAAAGAAAGATAGGGATATTAATC
TTCTTGAATCTAAATTTCAAAAACTTTATAATGTTGTTAGTGATCTGGAA
CAAAATCAATATGAGAAAAAAGAAAGTGAACTCAAGAATATTGTAGGGAA
CTTATCAACAAAAGGAAATGCACTTTTTGACATTACTAAATTGAGCGAAA
GTGAAGAATTAATAAGAAAAGTTGAAAGCGACCAAGCTATGTTAAGTGCA
AATTTAGCAGATACAAACCTCAAAGTGAAACTTTTAGAGCATCGCTCCAC
AAATGGTACATTGATATATAGGCTGGAAAACTTTACCCACAGACTTGAAC
AAGCACGCCAAGGAAAAATTTTTGCATTGCATTCACCACCATGCTTTACT
TCCCCAAACGGTTATAAATTTTGTTTACGAGTTTACCTTAATGGTGATGG
CATGGGCCAAGGAACACATATCTCAATATACTTTGTTTTAATGAGAAATC
ACTACGATAACCTCCTTGAATGGCCGTTCCAAAAGAAAATTTCAATCAGA
ATGATTAATCATAAAAGCCGACAAAATGATAAGAGAGAAACTTTTAATAC
CGATAAAACTTCCACATCCTTCCGTAAACCTGATAAAGAAATGAACATGG
CGGCAGGATGCCCCAAATTCCTTGATTTGAGTAGTTTATTAAATGGGGGT
TACTTGGCGGATGACTCCATTTTCATTGAAGTAAAAGTTGAAGATCCTGT
CAAAAGATGAAGACATGAAGAAACAGACTGTCAATATGCAAGAACTGAAT
GCGATATTTGTAGGCAGAAAGTTCTCAAGAAACAATTTGCAGAACATAGA
GCAAAAGATTGCACTGGAAATTACGATGTTGAAATGGAGGAATGGTGGCC
TGTACCTCATGCTATGAAGATAGACGCAGAGAAATAGGCTCTGAAATATG
TCCACTTGATGGGGAAAAAATTGAACATGACAGTTTTACAAGACTAGATA
AATTCATGGTCAGAGAAATATCCAAAATCCAAGTCCAGTGTTTTTATGAA
GAATGTAAATGGAAAGGAGCACTCAATGATATAAATAATAATACAAGATA
TGGAAAAAATTCTTCTTGGGGATAGAGAAATCACTCCTGTTACACCCGTT
GATAAACGCTTTGCTTGTCCACTATGTGGAAAACTTATGCAAAATCCACT
GCAGACTGACAGAGGTATCCAATCTATTCCACAATTTGTTTCGCCGAAAT
CACAAAGATCAACTGGCTCCTTACAGTACGACAAGNCACAACAGAAATGA
CATTCTTTTCTCATCAACAAGGAAACTTATGATACTGAGGAAACCAAAAT
GAAATCAAAATTTAAATGTCCAAGTTGTGGAAAAGAAGTTGAATCATCGA
ACTCTCATAACCATTGGAAAGATTGCCAAGGTACAAAATGTCCTTATGAA
CAATTTGGGTGCAAAAATACCTATGGCAGAAGTGCTAAGGAACATGAAGA
ACATATTTCAAATTACCATAGCTATGATCATTGTGTATTAGAATTTGTTC
AAGGTGTATTGGAAGAAAATAAAAACCTTGATAGCAGGATAATGCAAATG
ACAAGAGATAAACAAACAATGGATAGGAAATTCTCATCTTTACACAATGA
TTATCAAATCCTACAAAACAAATGCAAGGAACTTTTAGAGAAGTCTCAAA
AGAAAGATAGGGATATTAATCTTCTTGAATCTAAATTTCAAAAACTTTAT
AATGTTGTTAGTGATCTGGAACAAAATCAATATGAGAAAAAAGAAAGTGA
ACTCAAGAATATTGTAGGGAACTTATCAACAAAAGGAAATGCACTTTTTG
ACATTACTAAATTGAGCGAAAGTGAAGAATTAATAAGAAAAGTTGAAAGC
GACCAAGCTATGTTAAGTGCAAATTTAGCAGATACAAACCTCAAAGTGAA
ACTTTTAGAGCATCGCTCCACAAATGGTACATTGATATATAGGCTGGAAA
ACTTTACCCACAGACTTGAACAAGCACGCCAAGGAAAAATTTTTGCATTG
CATTCACCACCATGCTTTACTTCCCCAAACGGTTATAAATTTTGTTTACG
AGTTTACCTTAATGGTGATGGCATGGGCCAAGGAACACATATCTCAATAT
ACTTTGTTTTAATGAGAAATCACTACGATAACCTCCTTGAATGGCCGTTC
CAAAAGAAAATTTCAATCAGAATGATTAATCATAAAAGCCGACAAAATGA
TAAGAGAGAAACTTTTAATACCGATAAAACTTCCACATCCTTCCGTAAAC
CTGATAAAGAAATGAACATGGCGGCAGGATGCCCCAAATTCCTTGATTTG
AGTAGTTTATTAAATGGGGGTTACTTGGCGGATGACTCCATTTTCATTGA
AGTAAAAGTTGAAGATCCTGTCAAAAGATGAAGACATGAAGAAACAGACT
GTCAATATGCAAGAACTGAATGCGATATTTGTAGGCAGAAAGTTCTCAAG
AAACAATTTGCAGAACATAGAGCAAAAGATTGCACTGGAAATTACGATGT
TGAAATGGAGGAATGGTGGCCTGTACCTCATGCTATGAAGATAGACGCAG
AGAAATAGGCTCTGAAATATGTCCACTTGATGGGGAAAAAATTGAACATG
ACAGTTTTACAAGACTAGATAAATTCATGGTCAGAGAAATATCCAAAATC
CAAGTCCAGTGTTTTTATGAAGAATGTAAATGGAAAGGAGCACTCAATGA
TATAAATAATAATACAAGATATGGAAAAAATTCTTCTTGGGGATAGAGAA
ATCACTCCTGTTACACCCGTTGATAAACGCTTTGCTTGTCCACTATGTGG
AAAACTTATGCAAAATCCACTGCAGACTGACAGAGGTATCCAATCTATTC
CACAATTTGTTTCGCCGAAATCACAAAGATCAACTGGCTCCTTACAGTAC
GACAAGNCACAACAGAAATGACATTCTTTTCTCATCAACAAGGAAACTTA
TGATACTGAGGAAACCAAAATGAAATCAAAATTTAAATGTCCAAGTTGTG
GAAAAGAAGTTGAATCATCGAACTCTCATAACCATTGGAAAGATTGCCAA
GGTACAAAATGTCCTTATGAACAATTTGGGTGCAAAAATACCTATGGCAG
AAGTGCTAAGGAACATGAAGAACATATTTCAAATTACCATAGCTATGATC
ATTGTGTATTAGAATTTGTTCAAGGTGTATTGGAAGAAAATAAAAACCTT
GATAGCAGGATAATGCAAATGACAAGAGATAAACAAACAATGGATAGGAA
ATTCTCATCTTTACACAATGATTATCAAATCCTACAAAACAAATGCAAGG
AACTTTTAGAGAAGTCTCAAAAGAAAGATAGGGATATTAATCTTCTTGAA
TCTAAATTTCAAAAACTTTATAATGTTGTTAGTGATCTGGAACAAAATCA
ATATGAGAAAAAAGAAAGTGAACTCAAGAATATTGTAGGGAACTTATCAA
CAAAAGGAAATGCACTTTTTGACATTACTAAATTGAGCGAAAGTGAAGAA
TTAATAAGAAAAGTTGAAAGCGACCAAGCTATGTTAAGTGCAAATTTAGC
AGATACAAACCTCAAAGTGAAACTTTTAGAGCATCGCTCCACAAATGGTA
CATTGATATATAGGCTGGAAAACTTTACCCACAGACTTGAACAAGCACGC
CAAGGAAAAATTTTTGCATTGCATTCACCACCATGCTTTACTTCCCCAAA
CGGTTATAAATTTTGTTTACGAGTTTACCTTAATGGTGATGGCATGGGCC
AAGGAACACATATCTCAATATACTTTGTTTTAATGAGAAATCACTACGAT
AACCTCCTTGAATGGCCGTTCCAAAAGAAAATTTCAATCAGAATGATTAA
TCATAAAAGCCGACAAAATGATAAGAGAGAAACTTTTAATACCGATAAAA
CTTCCACATCCTTCCGTAAACCTGATAAAGAAATGAACATGGCGGCAGGA
TGCCCCAAATTCCTTGATTTGAGTAGTTTATTAAATGGGGGTTACTTGGC
GGATGACTCCATTTTCATTGAAGTAAAAGTTGAAGATCCTGTCAAAAGAT
GAAGACATGAAGAAACAGACTGTCAATATGCAAGAACTGAATGCGATATT
TGTAGGCAGAAAGTTCTCAAGAAACAATTTGCAGAACATAGAGCAAAAGA
TTGCACTGGAAATTACGATGTTGAAATGGAGGAATGGTGGCCTGTACCTC
ATGCTATGAAGATAGACGCAGAGAAATAGGCTCTGAAATATGTCCACTTG
ATGGGGAAAAAATTGAACATGACAGTTTTACAAGACTAGATAAATTCATG
GTCAGAGAAATATCCAAAATCCAAGTCCAGTGTTTTTATGAAGAATGTAA
ATGGAAAGGAGCACTCAATGATATAAATAATAATACAAGATATGGAAAAA
ATTCTTCTTGGGGATAGAGAAATCACTCCTGTTACACCCGTTGATAAACG
CTTTGCTTGTCCACTATGTGGAAAACTTATGCAAAATCCACTGCAGACTG
ACAGAGGTATCCAATCTATTCCACAATTTGTTTCGCCGAAATCACAAAGA
TCAACTGGCTCCTTACAGTACGACAAGNCACAACAGAAATGACATTCTTT
TCTCATCAACAAGGAAACTTATGATACTGAGGAAACCAAAATGAAATCAA
AATTTAAATGTCCAAGTTGTGGAAAAGAAGTTGAATCATCGAACTCTCAT
AACCATTGGAAAGATTGCCAAGGTACAAAATGTCCTTATGAACAATTTGG
GTGCAAAAATACCTATGGCAGAAGTGCTAAGGAACATGAAGAACATATTT
CAAATTACCATAGCTATGATCATTGTGTATTAGAATTTGTTCAAGGTGTA
TTGGAAGAAAATAAAAACCTTGATAGCAGGATAATGCAAATGACAAGAGA
TAAACAAACAATGGATAGGAAATTCTCATCTTTACACAATGATTATCAAA
TCCTACAAAACAAATGCAAGGAACTTTTAGAGAAGTCTCAAAAGAAAGAT
AGGGATATTAATCTTCTTGAATCTAAATTTCAAAAACTTTATAATGTTGT
TAGTGATCTGGAACAAAATCAATATGAGAAAAAAGAAAGTGAACTCAAGA
ATATTGTAGGGAACTTATCAACAAAAGGAAATGCACTTTTTGACATTACT
AAATTGAGCGAAAGTGAAGAATTAATAAGAAAAGTTGAAAGCGACCAAGC
TATGTTAAGTGCAAATTTAGCAGATACAAACCTCAAAGTGAAACTTTTAG
AGCATCGCTCCACAAATGGTACATTGATATATAGGCTGGAAAACTTTACC
CACAGACTTGAACAAGCACGCCAAGGAAAAATTTTTGCATTGCATTCACC
ACCATGCTTTACTTCCCCAAACGGTTATAAATTTTGTTTACGAGTTTACC
TTAATGGTGATGGCATGGGCCAAGGAACACATATCTCAATATACTTTGTT
TTAATGAGAAATCACTACGATAACCTCCTTGAATGGCCGTTCCAAAAGAA
AATTTCAATCAGAATGATTAATCATAAAAGCCGACAAAATGATAAGAGAG
AAACTTTTAATACCGATAAAACTTCCACATCCTTCCGTAAACCTGATAAA
GAAATGAACATGGCGGCAGGATGCCCCAAATTCCTTGATTTGAGTAGTTT
ATTAAATGGGGGTTACTTGGCGGATGACTCCATTTTCATTGAAGTAAAAG
TTGAAGATCCTGTCAAAAGATGAAGACATGAAGAAACAGACTGTCAATAT
GCAAGAACTGAATGCGATATTTGTAGGCAGAAAGTTCTCAAGAAACAATT
TGCAGAACATAGAGCAAAAGATTGCACTGGAAATTACGATGTTGAAATGG
AGGAATGGTGGCCTGTACCTCATGCTATGAAGATAGACGCAGAGAAATAG
GCTCTGAAATATGTCCACTTGATGGGGAAAAAATTGAACATGACAGTTTT
ACAAGACTAGATAAATTCATGGTCAGAGAAATATCCAAAATCCAAGTCCA
GTGTTTTTATGAAGAATGTAAATGGAAAGGAGCACTCAATGATATAAATA
ATAATACAAGATATGGAAAAAATTCTTCTTGGGGATAGAGAAATCACTCC
TGTTACACCCGTTGATAAACGCTTTGCTTGTCCACTATGTGGAAAACTTA
TGCAAAATCCACTGCAGACTGACAGAGGTATCCAATCTATTCCACAATTT
GTTTCGCCGAAATCACAAAGATCAACTGGCTCCTTACAGTACGACAAGNC
ACAACAGAAATGACATTCTTTTCTCATCAACAAGGAAACTTATGATACTG
AGGAAACCAAAATGAAATCAAAATTTAAATGTCCAAGTTGTGGAAAAGAA
GTTGAATCATCGAACTCTCATAACCATTGGAAAGATTGCCAAGGTACAAA
ATGTCCTTATGAACAATTTGGGTGCAAAAATACCTATGGCAGAAGTGCTA
AGGAACATGAAGAACATATTTCAAATTACCATAGCTATGATCATTGTGTA
TTAGAATTTGTTCAAGGTGTATTGGAAGAAAATAAAAACCTTGATAGCAG
GATAATGCAAATGACAAGAGATAAACAAACAATGGATAGGAAATTCTCAT
CTTTACACAATGATTATCAAATCCTACAAAACAAATGCAAGGAACTTTTA
GAGAAGTCTCAAAAGAAAGATAGGGATATTAATCTTCTTGAATCTAAATT
TCAAAAACTTTATAATGTTGTTAGTGATCTGGAACAAAATCAATATGAGA
AAAAAGAAAGTGAACTCAAGAATATTGTAGGGAACTTATCAACAAAAGGA
AATGCACTTTTTGACATTACTAAATTGAGCGAAAGTGAAGAATTAATAAG
AAAAGTTGAAAGCGACCAAGCTATGTTAAGTGCAAATTTAGCAGATACAA
ACCTCAAAGTGAAACTTTTAGAGCATCGCTCCACAAATGGTACATTGATA
TATAGGCTGGAAAACTTTACCCACAGACTTGAACAAGCACGCCAAGGAAA
AATTTTTGCATTGCATTCACCACCATGCTTTACTTCCCCAAACGGTTATA
AATTTTGTTTACGAGTTTACCTTAATGGTGATGGCATGGGCCAAGGAACA
CATATCTCAATATACTTTGTTTTAATGAGAAATCACTACGATAACCTCCT
TGAATGGCCGTTCCAAAAGAAAATTTCAATCAGAATGATTAATCATAAAA
GCCGACAAAATGATAAGAGAGAAACTTTTAATACCGATAAAACTTCCACA
TCCTTCCGTAAACCTGATAAAGAAATGAACATGGCGGCAGGATGCCCCAA
ATTCCTTGATTTGAGTAGTTTATTAAATGGGGGTTACTTGGCGGATGACT
CCATTTTCATTGAAGTAAAAGTTGAAGATCCTGTCAAAAGATGAAGACAT
GAAGAAACAGACTGTCAATATGCAAGAACTGAATGCGATATTTGTAGGCA
GAAAGTTCTCAAGAAACAATTTGCAGAACATAGAGCAAAAGATTGCACTG
GAAATTACGATGTTGAAATGGAGGAATGGTGGCCTGTACCTCATGCTATG
AAGATAGACGCAGAGAAATAGGCTCTGAAATATGTCCACTTGATGGGGAA
AAAATTGAACATGACAGTTTTACAAGACTAGATAAATTCATGGTCAGAGA
AATATCCAAAATCCAAGTCCAGTGTTTTTATGAAGAATGTAAATGGAAAG
GAGCACTCAATGATATAAATAATAATACAAGATATGGAAAAAATTCTTCT
TGGGGATAGAGAAATCACTCCTGTTACACCCGTTGATAAACGCTTTGCTT
GTCCACTATGTGGAAAACTTATGCAAAATCCACTGCAGACTGACAGAGGT
ATCCAATCTATTCCACAATTTGTTTCGCCGAAATCACAAAGATCAACTGG
CTCCTTACAGTACGACAAGNCACAACAGAAATGACATTCTTTTCTCATCA
ACAAGGAAACTTATGATACTGAGGAAACCAAAATGAAATCAAAATTTAAA
TGTCCAAGTTGTGGAAAAGAAGTTGAATCATCGAACTCTCATAACCATTG
GAAAGATTGCCAAGGTACAAAATGTCCTTATGAACAATTTGGGTGCAAAA
ATACCTATGGCAGAAGTGCTAAGGAACATGAAGAACATATTTCAAATTAC
CATAGCTATGATCATTGTGTATTAGAATTTGTTCAAGGTGTATTGGAAGA
AAATAAAAACCTTGATAGCAGGATAATGCAAATGACAAGAGATAAACAAA
CAATGGATAGGAAATTCTCATCTTTACACAATGATTATCAAATCCTACAA
AACAAATGCAAGGAACTTTTAGAGAAGTCTCAAAAGAAAGATAGGGATAT
TAATCTTCTTGAATCTAAATTTCAAAAACTTTATAATGTTGTTAGTGATC
TGGAACAAAATCAATATGAGAAAAAAGAAAGTGAACTCAAGAATATTGTA
GGGAACTTATCAACAAAAGGAAATGCACTTTTTGACATTACTAAATTGAG
CGAAAGTGAAGAATTAATAAGAAAAGTTGAAAGCGACCAAGCTATGTTAA
GTGCAAATTTAGCAGATACAAACCTCAAAGTGAAACTTTTAGAGCATCGC
TCCACAAATGGTACATTGATATATAGGCTGGAAAACTTTACCCACAGACT
TGAACAAGCACGCCAAGGAAAAATTTTTGCATTGCATTCACCACCATGCT
TTACTTCCCCAAACGGTTATAAATTTTGTTTACGAGTTTACCTTAATGGT
GATGGCATGGGCCAAGGAACACATATCTCAATATACTTTGTTTTAATGAG
AAATCACTACGATAACCTCCTTGAATGGCCGTTCCAAAAGAAAATTTCAA
TCAGAATGATTAATCATAAAAGCCGACAAAATGATAAGAGAGAAACTTTT
AATACCGATAAAACTTCCACATCCTTCCGTAAACCTGATAAAGAAATGAA
CATGGCGGCAGGATGCCCCAAATTCCTTGATTTGAGTAGTTTATTAAATG
GGGGTTACTTGGCGGATGACTCCATTTTCATTGAAGTAAAAGTTGAAGAT
CCTGTCAAAAGATGAAGACATGAAGAAACAGACTGTCAATATGCAAGAAC
TGAATGCGATATTTGTAGGCAGAAAGTTCTCAAGAAACAATTTGCAGAAC
ATAGAGCAAAAGATTGCACTGGAAATTACGATGTTGAAATGGAGGAATGG
TGGCCTGTACCTCATGCTATGAAGATAGACGCAGAGAAATAGGCTCTGAA
ATATGTCCACTTGATGGGGAAAAAATTGAACATGACAGTTTTACAAGACT
AGATAAATTCATGGTCAGAGAAATATCCAAAATCCAAGTCCAGTGTTTTT
ATGAAGAATGTAAATGGAAAGGAGCACTCAATGATATAAATAATAATACA
AGATATGGAAAAAATTCTTCTTGGGGATAGAGAAATCACTCCTGTTACAC
CCGTTGATAAACGCTTTGCTTGTCCACTATGTGGAAAACTTATGCAAAAT
CCACTGCAGACTGACAGAGGTATCCAATCTATTCCACAATTTGTTTCGCC
GAAATCACAAAGATCAACTGGCTCCTTACAGTACGACAAGNCACAACAGA
AATGACATTCTTTTCTCATCAACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029698XLOC_029698Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046528-proteinTCONS_00046528-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046528-exon-scaffold_113-1575043694:191678..191714TCONS_00046528-exon-scaffold_113-1575043694:191678..191714Clytia hemisphaericaexon
TCONS_00046528-exon-scaffold_113-1575043694:191493..191562TCONS_00046528-exon-scaffold_113-1575043694:191493..191562Clytia hemisphaericaexon
TCONS_00046528-exon-scaffold_113-1575043694:190857..190984TCONS_00046528-exon-scaffold_113-1575043694:190857..190984Clytia hemisphaericaexon
TCONS_00046528-exon-scaffold_113-1575043694:189413..189609TCONS_00046528-exon-scaffold_113-1575043694:189413..189609Clytia hemisphaericaexon
TCONS_00046528-exon-scaffold_113-1575043694:188846..188974TCONS_00046528-exon-scaffold_113-1575043694:188846..188974Clytia hemisphaericaexon
TCONS_00046528-exon-scaffold_113-1575043694:187397..188660TCONS_00046528-exon-scaffold_113-1575043694:187397..188660Clytia hemisphaericaexon
TCONS_00046528-exon-scaffold_113-1575043694:187084..187224TCONS_00046528-exon-scaffold_113-1575043694:187084..187224Clytia hemisphaericaexon
TCONS_00046528-exon-scaffold_113-1510915933:191678..191714TCONS_00046528-exon-scaffold_113-1510915933:191678..191714Clytia hemisphaericaexon
TCONS_00046528-exon-scaffold_113-1510915933:191493..191562TCONS_00046528-exon-scaffold_113-1510915933:191493..191562Clytia hemisphaericaexon
TCONS_00046528-exon-scaffold_113-1510915933:190857..190984TCONS_00046528-exon-scaffold_113-1510915933:190857..190984Clytia hemisphaericaexon
TCONS_00046528-exon-scaffold_113-1510915933:189413..189609TCONS_00046528-exon-scaffold_113-1510915933:189413..189609Clytia hemisphaericaexon
TCONS_00046528-exon-scaffold_113-1510915933:188846..188974TCONS_00046528-exon-scaffold_113-1510915933:188846..188974Clytia hemisphaericaexon
TCONS_00046528-exon-scaffold_113-1510915933:187397..188660TCONS_00046528-exon-scaffold_113-1510915933:187397..188660Clytia hemisphaericaexon
TCONS_00046528-exon-scaffold_113-1510915933:187084..187224TCONS_00046528-exon-scaffold_113-1510915933:187084..187224Clytia hemisphaericaexon
TCONS_00046528-exon-scaffold_113-1491911889:191678..191714TCONS_00046528-exon-scaffold_113-1491911889:191678..191714Clytia hemisphaericaexon
TCONS_00046528-exon-scaffold_113-1491911889:191493..191562TCONS_00046528-exon-scaffold_113-1491911889:191493..191562Clytia hemisphaericaexon
TCONS_00046528-exon-scaffold_113-1491911889:190857..190984TCONS_00046528-exon-scaffold_113-1491911889:190857..190984Clytia hemisphaericaexon
TCONS_00046528-exon-scaffold_113-1491911889:189413..189609TCONS_00046528-exon-scaffold_113-1491911889:189413..189609Clytia hemisphaericaexon
TCONS_00046528-exon-scaffold_113-1491911889:188846..188974TCONS_00046528-exon-scaffold_113-1491911889:188846..188974Clytia hemisphaericaexon
TCONS_00046528-exon-scaffold_113-1491911889:187397..188660TCONS_00046528-exon-scaffold_113-1491911889:187397..188660Clytia hemisphaericaexon
TCONS_00046528-exon-scaffold_113-1491911889:187084..187224TCONS_00046528-exon-scaffold_113-1491911889:187084..187224Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_113supercontigscaffold_113:187084..191714 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
21.3554	17.5259	8.87116	6.21617	27.7716	19.2899	48.2042	50.5466	13.5378	43.0912	31.1845	12.8464	39.5789	33.5826	45.7555	76.9485	37.1442	30.7071	60.1576	67.83	24.9314	27.1091	51.4823	54.4379	47.3624	60.1458	103.681	94.9112	98.7496	66.3969
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002083MATH/TRAF_dom
IPR012227TNF_rcpt--assoc_TRAF
IPR013083Znf_RING/FYVE/PHD
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0042981regulation of apoptotic process
GO:0007165signal transduction
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042981 regulation of apoptotic process
biological_process GO:0007165 signal transduction
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00046528 vs. Swiss-Prot (Human)
Match: TRAF3 (TNF receptor-associated factor 3 OS=Homo sapiens GN=TRAF3 PE=1 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 6.005e-58
Identity = 156/533 (29.27%), Postives = 261/533 (48.97%), Query Frame = 1 
Query:  160 VTPVDKRFACPLCGKLMQNPLQTDRGMVACTSCYEDRRREIGSEICPLDGEKIEHDSFTRLDKFMVREISKIQVQCFYEE--CKWKGALNDINRHEETDCQYARTEC--DICRQKVLKKQFAEHRAKDC-------------TGNYDVEMEETYDTEETKMKSKFKCPSCGKEVESSNSHNHWKDC--QGTKCPYEQFGCK-NTYGRSAKEHEEHISNYHSYDHCVLEFVQGVLEENKNLDSRIMQMTRDKQTMDRKFSSLHN---DYQILQNKCKELLEKSQKK----DRDINLLESKFQKLYNVVSDLEQNQYEKKESELKNIVGNLSTKGNALFDITK----LSESEELIR-KVESDQAMLSAN---LADTNLKVKLLEHRSTNGTLIYRLENFTHRLEQARQGKIFALHSPPCFTSPNGYKFCLRVYLNGDGMGQGTHISIYFVLMRNHYDNLLEWPFQKKISIRMINHKSRQNDKRETFNTDKTSTSFRKPDKEMNMAAGCPKFLDLSSLLNGGYLADDSIFIEVKVE 1653
            V  V+ ++ C  C  ++ +P QT+ G   C SC         S  C    E I  D   + D    REI  +Q+ C  E   C  +  L  +  H + DC +    C    C++KVL+K   +H  K C                  ++  E  D     +    KC    + +  S    H  +C    + C ++++GC      +  K HE   +  H         V  + E + +L+ ++  +  +    ++   SLHN    ++I   + KE+L  ++ K     R I+    K ++L   +    QN +E+ +S +K+ V +L  +   L  + K    ++ +  L+  ++     MLS +   LAD +L+ ++LE  S NG LI+++ ++  R ++A  GK  +L+S P +T   GYK C RVYLNGDGMG+GTH+S++FV+MR  YD LL WPF++K+++ +++  S +    + F  D  S+SF+KP  EMN+A+GCP F+  + L NG Y+ DD+IFI+V V+
Sbjct:   44 VKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSS-SSPKCTACQESIVKDKVFK-DNCCKREILALQIYCRNESRGCAEQLMLGHLLVHLKNDCHFEELPCVRPDCKEKVLRKDLRDHVEKACKYREATCSHCKSQVPMIALQKHEDTDCPCVVVSCPHKCSV--QTLLRSELSAHLSECVNAPSTCSFKRYGCVFQGTNQQIKAHEASSAVQH---------VNLLKEWSNSLEKKVSLLQNESVEKNKSIQSLHNQICSFEIEIERQKEMLRNNESKILHLQRVIDSQAEKLKELDKEIRPFRQN-WEEADS-MKSSVESLQNRVTELESVDKSAGQVARNTGLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVD 561
The following BLAST results are available for this feature:
BLAST of TCONS_00046528 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF36.005e-5829.27TNF receptor-associated factor 3 OS=Homo sapiens G... [more]
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