TCONS_00046645-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00046645-protein
Unique NameTCONS_00046645-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length336

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00046645-protein ID=TCONS_00046645-protein|Name=TCONS_00046645-protein|organism=Clytia hemisphaerica|type=polypeptide|length=336bp
MMDSFIRDAADIKDKTMSFETLKWYVVSIFDLLWTLIQVIGAILIACVEF
FYVPPKDLTGEIVVLTGAAGDIGSNLAKLLANDGCKMVLLDINKSNLLKL
CHEINKTSGNKHDAISFACDITNIDQMKDVCGEIKQKVGDPTMLVNNAGI
VAGKYFHDLEYKDFVRTFEVNMLSNFFLVKQFLPAMIEKEHGHVVSVSSI
LARKGLAGVAEYAASKSAVATFMESLRYEIQVAGKKGINCTTVYPYQLDS
NLFKGTAMRFKWVPFLHLLKPEYVAEKIYTAIKKNQVTLYIPRILYFLVA
LQNLLPERANDILYNFLQANEAMKTFCGTRNVKKSD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029775XLOC_029775Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00046645TCONS_00046645Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002347SDR_fam
IPR020904Sc_DH/Rdtase_CS
IPR016040NAD(P)-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016491 oxidoreductase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002347Short-chain dehydrogenase/reductase SDRPRINTSPR00081GDHRDHcoord: 139..150
score: 51.73
coord: 62..79
score: 32.83
coord: 212..231
score: 31.9
coord: 186..202
score: 27.23
coord: 236..253
score: 20.25
IPR002347Short-chain dehydrogenase/reductase SDRPRINTSPR00080SDRFAMILYcoord: 192..200
score: 36.44
coord: 139..150
score: 50.06
coord: 212..231
score: 34.89
IPR002347Short-chain dehydrogenase/reductase SDRPFAMPF00106adh_shortcoord: 62..254
e-value: 1.0E-44
score: 152.2
NoneNo IPR availableGENE3D3.40.50.720coord: 53..325
e-value: 2.9E-51
score: 173.8
NoneNo IPR availableCDDcd0533917beta-HSDXI-like_SDR_ccoord: 62..309
e-value: 1.92274E-83
score: 254.474
IPR020904Short-chain dehydrogenase/reductase, conserved sitePROSITEPS00061ADH_SHORTcoord: 199..227
IPR016040NAD(P)-binding domainSUPERFAMILY51735NAD(P)-binding Rossmann-fold domainscoord: 52..318

Blast
[Close]
BLAST of TCONS_00046645-protein vs. Swiss-Prot (Human)
Match: RDHE2 (Epidermal retinol dehydrogenase 2 OS=Homo sapiens GN=SDR16C5 PE=2 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 1.631e-52
Identity = 99/273 (36.26%), Postives = 157/273 (57.51%), Query Frame = 0 
Query:   54 PPKDLTGEIVVLTGAAGDIGSNLAKLLANDGCKMVLLDINKSNLLKLCHEINKTSGNKHDAISFACDITNIDQMKDVCGEIKQKVGDPTMLVNNAGIVAGKYFHDLEYKDFVRTFEVNMLSNFFLVKQFLPAMIEKEHGHVVSVSSILARKGLAGVAEYAASKSAVATFMESLRYEIQVAGKKGINCTTVYPYQLDSNLFKGTAMRFKWVPFLHLLKPEYVAEKIYTAIKKNQVTLYIPRILYFLVALQNLLPERANDILYNFLQANEAMKTF 326
            P K++ GEIV++TGA   +G  LA   A  G  +VL DINK    + C    +    +  A  + CD +  + +  V  ++K++VGD ++L+NNAGIV GK F D   +   ++F+VN  ++ +  K FLPAMI  +HGH+V +SS     G+ G+A+Y ASK A   F ES+  E  V  +KGI  T V P+ + + +F+G          L +L+P+Y  EKI  AI + ++ LY+P++LYF++ L++ LP +   ++ ++L    AM  F
Sbjct:   34 PRKNVAGEIVLITGAGSGLGRLLALQFARLGSVLVLWDINKEGNEETCKMAREAGATRVHA--YTCDCSQKEGVYRVADQVKKEVGDVSILINNAGIVTGKKFLDCPDELMEKSFDVNFKAHLWTYKAFLPAMIANDHGHLVCISSSAGLSGVNGLADYCASKFAAFGFAESVFVETFVQKQKGIKTTIVCPFFIKTGMFEGCTT--GCPSLLPILEPKYAVEKIVEAILQEKMYLYMPKLLYFMMFLKSFLPLKTGLLIADYLGILHAMDGF 302
The following BLAST results are available for this feature:
BLAST of TCONS_00046645-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RDHE21.631e-5236.26Epidermal retinol dehydrogenase 2 OS=Homo sapiens ... [more]
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