TCONS_00046645 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00046645
Unique Name	TCONS_00046645
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1309

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_116:413056..423115+
coding sequence from alignment at scaffold_116:413056..423115+

transcript sequence

>TCONS_00046645 ID=TCONS_00046645|Name=TCONS_00046645|organism=Clytia hemisphaerica|type=transcript|length=1309bp
GTTGAACCCGACTAGAATGCTACCTACCAGTCGGTCCCCTATGACTGAGA
TGGCGATGGGGACGACTGACACTAGTAAATATCCATGATGGACAGTTTTA
TAAGGGATGCAGCagATATCAAAGATAAGACAATGagttttgaaacttta
aaatgGTATGTGGTGTCCATTTTTGATCTATTATGGACATTGATACAAGT
TATTGGTGCCATTTTAATTGCAtgtgttgaatttttttacgTCCCGCCAA
AAGATCTTACTGGTGAGATTGTAGTTTTGACTGGTGCTGCTGGTGATATT
GGTTCAAATCTGGCAAAATTGCTGGCAAATGATGGATGTAAGATGGTTTT
ATTGGACATCAATAAGTCAAATTTACTGAAGTTATGTCATGAGATCAATA
AAACCTCTGGCAACAAACACGATGCTATCTCCTTTGCATGTGATATCACT
AACATTGACCAAATGAAAGATGTCTGTggagaaatcaaacaaaaagttGG
AGACCCTACAATGCTGGTCAATAATGCTGGAATAGTTgctggaaaatatt
ttcatgatttaGAATACAAAGATTTTGTGCGTACTTTTGAAGTCAACATg
ctgtcaaatttttttcttgtcaaACAGTTTTTACCGGCAATGATAGAGAA
AGAACATGGTCACGTGGTGTCTGTGTCATCTATATTGGCGCGTAAAGGGT
TGGCAGGTGTTGCTGAATATGCTGCTTCAAAGTCTGCAGTTGCAACATTT
ATGGAATCGTTGAGATATGAAATACAAGTGGCAGgAAAGAAAGGCATCAA
TTGCACCACTGTTTATCCATACCAACTTGATTCCAATTTATTCAAAGGGA
CTGCAATGCGTTTCAAATGGGTTCCCTTTCTTCATTTATTAAAACCAGAG
TATGTTGCTGAAAAGATTTACACAGCTATCAAGAAAAACCAAGTGACATT
ATATATTCCGAGAATTCTTTATTTCTTGGTTGCCTTACAGAATTTGTTAC
CCGAAAGAGCAAATGATATCTTGTATAACTTCTTACAAGCTAATGAAGCA
ATGAAAACATTTTGTGGTACTCGAAATGTGAAGAAATCAGATTagaaaac
attgatttttttatttttaaactaattttttctttaataacGCTTGATTT
TGATGGATCAACAAATTTACCcctgtacacttttttttcttaCTTCGTag
cttttgtaaattttttctaccgggtgcgccacaaaaaagtttctctcttt
gagactaattttctcgaaatctaaaaattttaaaagaaccactcCTATAT
CATCGGAAG

Run BLAST on NCBI

protein sequence of TCONS_00046645-protein

>TCONS_00046645-protein ID=TCONS_00046645-protein|Name=TCONS_00046645-protein|organism=Clytia hemisphaerica|type=polypeptide|length=336bp
MMDSFIRDAADIKDKTMSFETLKWYVVSIFDLLWTLIQVIGAILIACVEF
FYVPPKDLTGEIVVLTGAAGDIGSNLAKLLANDGCKMVLLDINKSNLLKL
CHEINKTSGNKHDAISFACDITNIDQMKDVCGEIKQKVGDPTMLVNNAGI
VAGKYFHDLEYKDFVRTFEVNMLSNFFLVKQFLPAMIEKEHGHVVSVSSI
LARKGLAGVAEYAASKSAVATFMESLRYEIQVAGKKGINCTTVYPYQLDS
NLFKGTAMRFKWVPFLHLLKPEYVAEKIYTAIKKNQVTLYIPRILYFLVA
LQNLLPERANDILYNFLQANEAMKTFCGTRNVKKSD

Run BLAST on NCBI

transcript from alignment at scaffold_116:413056..423115+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00046645 ID=TCONS_00046645|Name=TCONS_00046645|organism=Clytia hemisphaerica|type=transcript|length=10060bp|location=Sequence derived from alignment at scaffold_116:413056..423115+ (Clytia hemisphaerica)
GTTGAACCCGACTAGAATGCTACCTACCAGTCGGTCCCCTATGACTGAGA
TGGCGATGGGGACGACTGACACTAGTAAATATCCATGATGGACAGTTTTA
TAAGGGATGCAGCaggtatgatttttttaaacactaTTATTACTAATTTT
ATTCGTTGCAACAGGGCTCTAGACCCTGGTAAAGATACCCCTAGGGTTGG
GATATACTAGGCTAAGCCTGGTATGTCAATATACAGTTACAGTATAACTT
TTATAGACCTAAAACtcggacaaaaatcagttttttgaaggaCAGTAgga
cagtcaggcacatcctggcaaatgaacagggtatttttcacttgcaatgg
gtggcaaatgcaaggggttgaaaacaaaagtgatgtaataacactgaata
ccccacgcaattgaaccgggttggaaatattttgcttcatttcaaagaac
tgcatagatgaaattttttttccatgggtcaattttgtcttcgaAGATTG
AGGAAACTTTTAACGAAAAAATAAAGTTCCCAGTTTTCTTCCTTTTTTCC
CATTTTCAGTTTGAAGTTCATTTatattcattttcacgcttttagcctga
gacgtcctatctcatttacactgggggacgaataccccatgcaaatgctc
accccgttcatttgccaggatgtgcctgactgaaggagcaagacgtaatt
aatcgaacgacaaaagttcgattaagttctttaatcgaacttttcaaaag
tcgctaaaattttgagaattcgattaagttcgacaaaacatattttaagt
tcgacaaagttcgacaacgagaaatgtttgacaaattcgacaaaaagcTC
AGTTCAGTTCgataaagttcgacaacaagaaAGGTTCGATAAATTCTATG
ACATAAAATGTTTGACAATGTTCGACAGTACAACAAATTGAGGAAAGTTT
TGTTCGACAACAGACAGCTTTGACGGAAATTCCcgctatttttccttttt
ttgcaaaagttgctgtaggaatgaaaataaagggataatgataattgatt
ATCCACTGACCGATGATCTGATAAAAAAGCAACTTATAAGATCTTTTTCT
GTTGAAGTAATTactgtacacatttttttttataagcaagtgtctgcccc
ctATGGCGCTATGTCAGGCTCGCATTACGCTTAGCATTAGCAGTCTGCAC
ATGCTAATAAATgatatgcttatagaaaaaacatgtagttatTCAAAGGA
CCGTCATGTTCTCCCAAATGACTATGCCAAGGAGGTGAATGTTCGAAAAA
TTCGAAACGTATGAAGATAGGGGTGTTCCAAAGAGGCCCCCCCCAGcagt
ttgcgtgatggcgtgattgggacttttttcttgcgtgatggcgtgattag
agattttttttgtgagGTTACTCAAATAGTTGAACAGTCAGTGTAATGGC
TGACAGCGTTTAtctttatgttttctttataTCTATTGTTTTTCTTCGAC
TTCTGTTTTCCCCTTGGTCATAAACAAGATGCAGAAGGCTTCAACCCCAC
AAAAGTTTCAACATCTTTCCAAGAGTTTCCGAAAGATTTTCTGTACACGT
GCATTATCGTTATGAAAGGTGGAGAAggtgaaagttttgagaaaaatgcc
tTGTTTGAACTGTTgccagttacatcaaaatgcctcgaaaatgtcaatat
gaaaattgcataatcagagaacgtatgtctcgctcattataaaaaggctg
agACAAACTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtggattgt
aacatcgagttaagtctcttttgttaagtcaccagggggtaaataaaaca
gaccttgatacatttatcgttcgtttcaacttgacgattcatttaaaact
tagcctcctaaatatttggggtaggtaaagtatgtacaaagaaattcata
cttttccaacccggcaaatcttaaaaaaaaagcgaacaataaaatataat
taccctttccaaataaacctcttcggtggcgagcgtagtctactctgacg
taattgtaaaatttatgtgatNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCT
CTGGAATtttgattgcatttattcaggttgattttttatgacttctaatg
gtactttttctaacgagtttgattactctgttctcacacttatgtctttg
tttttcgcgtccttttccgtgattacttttatttatatttttaaagacag
gtaagaaggcatattgatgtaactggtTGCAGCTCATTTTGATTCACCCT
GTATTTACAGGGATGCTTAACCTTGTAAATAAGTGCTTTTTACATAATGG
AAATACATTTCCTGATGCATAAGATTGTTTTGTGTCTCTATTCATTACAA
TCAATTTAATACTCTCGTTTTTCGCCTTTTtcaggggggggcacgcagtt
actacaagacagtatgacacttactaccgtggtggtactgtattcagaag
ttatgaaaacagttactacacagtgtagtaactgctgtttgggggtggtg
ccaaacactaaaactagcacttttggtgtagtaagtgcttatattttaat
tctttttaaggaactttcaaaatttttcacaaaaaatgaatttttttgtg
aaaaaattctttgttaaaaaaatatttttgttataaatggacgaaaagaa
atttgaaatttttctcagacccaactttgaaattatgctttccctaatta
tcattaaaatgttctcaacagctgttaaccaagtaaattaaaagaaaaNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNactaccaaggtgtagtaactgcaaagggtggtggtcctgaaaaaa
agtgttgaaaaagcacttactacacatcatgtcttgtagtaactgcgtgc
ccccccctgcctttttcaacatttttttaaaattgttattttaggttttt
gaacataacttttgaaccaatcgagtaaaaaaagtaatacaccaaatttt
aagttaggctttcctctgaatgattccaaaacaatctttgaaaaatctat
tTTCTACTGCCTgcaacatcaaatcaaagagggtaacttatttgtggcac
atCCGGTAGATCAAAAATACCTTGGCCCCACGAAAATAAGTTCTgcaaca
tttctttgtttagGAGCCATTGTTGTACTTGGAAGTGATATCCCTCAGAT
TTTGCTCAAATTAAAATCAGTGTTAGATATTATTGAGAAATTTATTGCTT
GGCCAAAGTTCTGGATTTTATGCCGCTTTGAAgatttgcttatttttatt
ggTTTATCAAGACTAAAACTCCAATCTTTAGGCctgatttaaaggttttg
tttttaaataagagtgatattgtttgtTTACTCGTCAATATTaagttaca
agctttttcacattgaattgacacatgTGGAAAAAGATTGGTCAGAAGTA
GGGAAAGAAAACAAtttggtacctgattttagcctgtggctaggggggac
taaccatgttaggggtcacctaaattttttcagatggacctgggggctag
attctatgtttggtgattgaattataagcagcctaccagaccataggttg
gcactttctcatcttatattttaatctaagcaatgttcaaaaactgacaa
tttggtatctgctatattatctgcagtgccgtagcaactgggccCCCCAa
gggggctatgcccccaataattttttcaaaaatggttattttgcaaaatg
caaagtttttcttttttaatttgtcataattgtcttataagtgcatgtgt
tgagtgcattttcaagcaatctagagctcaaattttcaaaattccccccc
ctcgggccaaaccatggttggccctcgctgtgtcactaaacttcagcacc
cctaatatgaaaatgcttcctacggcactgatctgtaaaaattctttaat
cctgttgcatttacttagataaaaaatctgtctggcaagggatctgcacc
ctgacttacaaaaccttgataatctgTCATGAACCTTCAGTACTTACTGT
agtttatttcttattttttagggcatttattctatttagcaataagctaa
actaactgttgtatttgtttgattgtttgaaaaaggattttcgaaaaaat
ttgacgtgtgtcattggcttaggggtcacctaagatatttggcaaccagg
ggttacctaaatcttaggggtcacctgaattcttagggggcacctaaaac
ctgctgccaagccatgtaTTAATAACAATAGGAGACCAGTTCCTGATATG
AGACATCTGTCTGATATGAGACAGGAGCACTTTTGTAAAAACAACTGAGG
CTAACTTCTTGAAACTCATCTTTTTTGAAGTGATTGGGAAAATTGCATGG
AAAATCCCTTGTTTTGTTTCAGTAGCATCCTCTTCTATGacaccgggtgc
gccacaaaaaagtttctctctttaaaactgattttctcgaaatctaaaaa
agaaccatttcttttccattggaaagaagaaaaacaaacttaaattttga
tgggtcatttattaaattcagTTCATTAGAttgaaagttatgctcaattg
aattaaaaagttactttcagaaagagcccgaaaatgttaaaaatcgatct
atcaaatttcattttaaaattggcaatcgcaataggctttacatgattaa
gagtatttttcagtaattaaacacataaattttgaaattgatgGGTTCGA
AAgtgtttaaaatcttcatcaaaatcattttaatttactttcactgaaat
tttcatcagatttttggttctagactagataaagtctatgtaaggctgga
tgtacctcaaaacccatatttgatgtatttttatgaattttaccagattt
tttggcttttttcaacaatttttttggacctaccctggtggggtagaggt
cctataaattaaccgatgtccgtccgttcgtctgttcgttcgtctgttcg
tccgtctgttaccagcttttctcaggattggctcattagttttttttgat
ttttggcacaatgatgcaaaatggtaatgcccaaaaNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNaaaaaaaaattatttccggccgaaaat
gccggaaatatgccggaaaaaccggtttttttggcattttctcaagattt
catcattagttttttctgattttNatttttttttggcattttctcaagat
ttcatcattagttttttctgattttttgcacaaagatgcgtattagcaat
gcccaaaacttggccgagtccgattNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNtctaagtttcatcatcaggtaggtctattcagcatgttgctt
gtttgaatttcaatggctgtgtgtttgaaagtctCATTGTCTGTTGTCTC
ATTgtcttgttttctttttattgaaattcaagcttcctttatataacaaa
aggtcatttagacagctagttatcatttttaatgactgaaacgaaagtac
tgatgtatcatgtaattatgcttctgtttgatttgatagatcgattttta
acgtgtttgagcactttctgaaagtaacttttttattcaattgagcataa
ctttcgatctaacgaaccgaatttaataaatgacccatcaaaatttaagt
tgctttcttctttccaatggaaaagaaatggttcttttaaacaTTTGTTG
CTCTCAACATTTTGAGTCTTGTGTTATcatatgttttatttttattaaag
tcgtgtcctaaaaataaaaaaaaggaatACACAAATCTGAATAGGAATGG
AGAAGCCATTGATTGAGTGTTTTTACACCTGataaaaattaatgatttga
ttgaaaatattttgataaataatgaaaaatatcaaatagaaATTTTCTAT
CAAGGAAAATTCTGTTGTCTGAAATCAATGTTATTGAATATTTGGTGTAT
TGTTTTTCCAACTcaaattttaatgaattttataTTAATTTTAGATATCA
AAGATAAGACAATGagttttgaaactttaaaatgGTATGTGGTGTCCATT
TTTGATCTATTATGGACATTGATACAAGTTATTGGTGCCATTTTAATTGC
AtgtgttgaatttttttacgTCCCGCCAAAAGATCTTACTGGTGAGATTG
TAGTTTTGACTGGTGCTGCTGGTGATATTGGTTCAAATCTGGCAAAATTG
CTGGCAAATGATGGTAAAACTTAAAACCTGATTATTTTAACCTAGTAATA
TTTTAACCCTTTGCAACTTCTGTGTATTTTTGCTTTCGTTCAAGTCTTCC
ATagtgcaaaacaaaaaaacaaatggATTGGATGCTATGGATTGCTAGCC
ATATTTATATTCCTTCCTCCGCTAGGAATATCTTCTTGTGTTAGTTGTTA
AAGACTTTGTTTAAAACTTTTCTGcatgattttatttaacattttgatct
cttattttttccaaataaaatctaatatGTGTTTTTCTATTCAGGATGTA
AGATGGTTTTATTGGACATCAATAAGTCAAATTTACTGAAGTTATGTCAT
GAGATCAATAAAACCTCTGGCAACAAACACGATGCTATCTCCTTTGCATG
TGATATCACTAACATTGACCAAATGAAAGATGTCTGTggagaaatcaaac
aaaaagttGGAGACCCTACAATGCTGGTCAATAATGCTGGAATAGTTgct
ggaaaatattttcatgatttaGAATACAAAGATTTTGTGCGTACTTTTGA
AGTCAACATgctgtcaaatttttttcttgtcaaACAGTTTTTACCGGCAA
TGATAGAGAAAGAACATGGTCACGTGGTGTCTGTGTCATCTATATTGGCG
CGTAAAGGGTTGGCAGGTGTTGCTGAATATGCTGCTTCAAAGTCTGCAGT
TGCAACATTTATGGAATCGTTGAGATATGAAATACAAGTGGCAGGTACTG
TATAGTctattttttgcttgattgggggctgtatttttcaaaaaatactg
ggggctagcttgctagggaggggctgagtgttgtgtaatagaactggggg
cagagctgataggttgaagatattttaaattatgttaaaaatctatgctg
tggggaaggttttatCCCTCTTGAAAATCTTTGTGAAGGTGGGGACTATG
TTTCTAGAATTAAGCCggggctattttccttagccccccccctccctgaa
aaatgctgggggctggacccctctgcacactatgtcaAATATAATCTTTG
GTTACAGAGTTTATAGCTTTTTGATGAGGAATTCACAATCCGAGCTGAAG
CTATGAGGATTACAAGCCACCTTTTTCCCTAAAGAACGTGTGGTTGCATC
CTGTAGTCCTGCGAGATTAGTAGCCCTCTCCCAGGGCTGTATCTtgattt
gaaaagtttgattttgaatttatgAAAATCCTCACCCAGTAAATATTAAA
ATGAAAGTATTTTAAttaacaaaattttgatttcagcaaaaaaaaaattt
ctttttaaaacatcaTCAGGCCTATGATACAAGTAAGAAGTCACATAGTT
CGatcccccctttcttaagggggggggggggggggtgacacCTTCCGAAA
AAATGAGAAGGAGGATAAAGGGAGATAAGGGATAACAAGTTAGGGGGATC
GTTTAAGGTTGATTCTTGGAAAGGGGTAGCAGCGAGAAGGGAATTATTAT
TATCGGATCCCACTATACActatatattttcgaaaatctagcccaaaacc
cttgggCGATACAGTAGACATTTTTTAAGGTTGGGGGATTATTTTAGAAA
TGGgggggggtcagacccctttccgcgcTATGAgtcaaaacaagtaaaca
ataaATCTATGCcgtttatatttttcattttgtaggAAAGAAAGGCATCA
ATTGCACCACTGTTTATCCATACCAACTTGATTCCAATTTATTCAAAGGG
ACTGCAATGCGTTTCAAATGGGTTCCCTTTCTTCATTTATTAAAACCAGA
GTATGTTGCTGAAAAGATTTACACAGCTATCAAGAAAAACCAAGTGACAT
TATATATTCCGAGAATTCTTTATTTCTTGGTTGCCTTACAGAATTTGTTA
CCCGAAAGAGCAAATGATATCTTGTATAACTTCTTACAAGCTAATGAAGC
AATGAAAACATTTTGTGGTACTCGAAATGTGAAGAAATCAGATTagaaaa
cattgatttttttatttttaaactaattttttctttaataacGCTTGATT
TTGATGGATCAACAAATTTACCcctgtacacttttttttcttaCTTCGTa
gcttttgtaaattttttctaccgggtgcgccacaaaaaagtttctctctt
tgagactaattttctcgaaatctaaaaattttaaaagaaccactcCTATA
TCATCGGAAG

Coding sequence (CDS) from alignment at scaffold_116:413056..423115+

>TCONS_00046645 ID=TCONS_00046645|Name=TCONS_00046645|organism=Clytia hemisphaerica|type=CDS|length=4044bp|location=Sequence derived from alignment at scaffold_116:413056..423115+ (Clytia hemisphaerica)
ATGATGGACAGTTTTATAAGGGATGCAGCagATATCAAAGATAAGACAAT
GagttttgaaactttaaaatgGTATGTGGTGTCCATTTTTGATCTATTAT
GGACATTGATACAAGTTATTGGTGCCATTTTAATTGCAtgtgttgaattt
ttttacgTCCCGCCAAAAGATCTTACTGGTGAGATTGTAGTTTTGACTGG
TGCTGCTGGTGATATTGGTTCAAATCTGGCAAAATTGCTGGCAAATGATG
GATGTAAGATGGTTTTATTGGACATCAATAAGTCAAATTTACTGAAGTTA
TGTCATGAGATCAATAAAACCTCTGGCAACAAACACGATGCTATCTCCTT
TGCATGTGATATCACTAACATTGACCAAATGAAAGATGTCTGTggagaaa
tcaaacaaaaagttGGAGACCCTACAATGCTGGTCAATAATGCTGGAATA
GTTgctggaaaatattttcatgatttaGAATACAAAGATTTTGTGCGTAC
TTTTGAAGTCAACATgctgtcaaatttttttcttgtcaaACAGTTTTTAC
CGGCAATGATAGAGAAAGAACATGGTCACGTGGTGTCTGTGTCATCTATA
TTGGCGCGTAAAGGGTTGGCAGGTGTTGCTGAATATGCTGCTTCAAAGTC
TGCAGTTGCAACATTTATGGAATCGTTGAGATATGAAATACAAGTGGCAG
gAAAGAAAGGCATCAATTGCACCACTGTTTATCCATACCAACTTGATTCC
AATTTATTCAAAGGGACTGCAATGCGTTTCAAATGGGTTCCCTTTCTTCA
TTTATTAAAACCAGAGTATGTTGCTGAAAAGATTTACACAGCTATCAAGA
AAAACCAAGTGACATTATATATTCCGAGAATTCTTTATTTCTTGGTTGCC
TTACAGAATTTGTTACCCGAAAGAGCAAATGATATCTTGTATAACTTCTT
ACAAGCTAATGAAGCAATGAAAACATTTTGTGGTACTCGAAATGTGAAGA
AATCAGATTagATGATGGACAGTTTTATAAGGGATGCAGCagATATCAAA
GATAAGACAATGagttttgaaactttaaaatgGTATGTGGTGTCCATTTT
TGATCTATTATGGACATTGATACAAGTTATTGGTGCCATTTTAATTGCAt
gtgttgaatttttttacgTCCCGCCAAAAGATCTTACTGGTGAGATTGTA
GTTTTGACTGGTGCTGCTGGTGATATTGGTTCAAATCTGGCAAAATTGCT
GGCAAATGATGGATGTAAGATGGTTTTATTGGACATCAATAAGTCAAATT
TACTGAAGTTATGTCATGAGATCAATAAAACCTCTGGCAACAAACACGAT
GCTATCTCCTTTGCATGTGATATCACTAACATTGACCAAATGAAAGATGT
CTGTggagaaatcaaacaaaaagttGGAGACCCTACAATGCTGGTCAATA
ATGCTGGAATAGTTgctggaaaatattttcatgatttaGAATACAAAGAT
TTTGTGCGTACTTTTGAAGTCAACATgctgtcaaatttttttcttgtcaa
ACAGTTTTTACCGGCAATGATAGAGAAAGAACATGGTCACGTGGTGTCTG
TGTCATCTATATTGGCGCGTAAAGGGTTGGCAGGTGTTGCTGAATATGCT
GCTTCAAAGTCTGCAGTTGCAACATTTATGGAATCGTTGAGATATGAAAT
ACAAGTGGCAGgAAAGAAAGGCATCAATTGCACCACTGTTTATCCATACC
AACTTGATTCCAATTTATTCAAAGGGACTGCAATGCGTTTCAAATGGGTT
CCCTTTCTTCATTTATTAAAACCAGAGTATGTTGCTGAAAAGATTTACAC
AGCTATCAAGAAAAACCAAGTGACATTATATATTCCGAGAATTCTTTATT
TCTTGGTTGCCTTACAGAATTTGTTACCCGAAAGAGCAAATGATATCTTG
TATAACTTCTTACAAGCTAATGAAGCAATGAAAACATTTTGTGGTACTCG
AAATGTGAAGAAATCAGATTagATGATGGACAGTTTTATAAGGGATGCAG
CagATATCAAAGATAAGACAATGagttttgaaactttaaaatgGTATGTG
GTGTCCATTTTTGATCTATTATGGACATTGATACAAGTTATTGGTGCCAT
TTTAATTGCAtgtgttgaatttttttacgTCCCGCCAAAAGATCTTACTG
GTGAGATTGTAGTTTTGACTGGTGCTGCTGGTGATATTGGTTCAAATCTG
GCAAAATTGCTGGCAAATGATGGATGTAAGATGGTTTTATTGGACATCAA
TAAGTCAAATTTACTGAAGTTATGTCATGAGATCAATAAAACCTCTGGCA
ACAAACACGATGCTATCTCCTTTGCATGTGATATCACTAACATTGACCAA
ATGAAAGATGTCTGTggagaaatcaaacaaaaagttGGAGACCCTACAAT
GCTGGTCAATAATGCTGGAATAGTTgctggaaaatattttcatgatttaG
AATACAAAGATTTTGTGCGTACTTTTGAAGTCAACATgctgtcaaatttt
tttcttgtcaaACAGTTTTTACCGGCAATGATAGAGAAAGAACATGGTCA
CGTGGTGTCTGTGTCATCTATATTGGCGCGTAAAGGGTTGGCAGGTGTTG
CTGAATATGCTGCTTCAAAGTCTGCAGTTGCAACATTTATGGAATCGTTG
AGATATGAAATACAAGTGGCAGgAAAGAAAGGCATCAATTGCACCACTGT
TTATCCATACCAACTTGATTCCAATTTATTCAAAGGGACTGCAATGCGTT
TCAAATGGGTTCCCTTTCTTCATTTATTAAAACCAGAGTATGTTGCTGAA
AAGATTTACACAGCTATCAAGAAAAACCAAGTGACATTATATATTCCGAG
AATTCTTTATTTCTTGGTTGCCTTACAGAATTTGTTACCCGAAAGAGCAA
ATGATATCTTGTATAACTTCTTACAAGCTAATGAAGCAATGAAAACATTT
TGTGGTACTCGAAATGTGAAGAAATCAGATTagATGATGGACAGTTTTAT
AAGGGATGCAGCagATATCAAAGATAAGACAATGagttttgaaactttaa
aatgGTATGTGGTGTCCATTTTTGATCTATTATGGACATTGATACAAGTT
ATTGGTGCCATTTTAATTGCAtgtgttgaatttttttacgTCCCGCCAAA
AGATCTTACTGGTGAGATTGTAGTTTTGACTGGTGCTGCTGGTGATATTG
GTTCAAATCTGGCAAAATTGCTGGCAAATGATGGATGTAAGATGGTTTTA
TTGGACATCAATAAGTCAAATTTACTGAAGTTATGTCATGAGATCAATAA
AACCTCTGGCAACAAACACGATGCTATCTCCTTTGCATGTGATATCACTA
ACATTGACCAAATGAAAGATGTCTGTggagaaatcaaacaaaaagttGGA
GACCCTACAATGCTGGTCAATAATGCTGGAATAGTTgctggaaaatattt
tcatgatttaGAATACAAAGATTTTGTGCGTACTTTTGAAGTCAACATgc
tgtcaaatttttttcttgtcaaACAGTTTTTACCGGCAATGATAGAGAAA
GAACATGGTCACGTGGTGTCTGTGTCATCTATATTGGCGCGTAAAGGGTT
GGCAGGTGTTGCTGAATATGCTGCTTCAAAGTCTGCAGTTGCAACATTTA
TGGAATCGTTGAGATATGAAATACAAGTGGCAGgAAAGAAAGGCATCAAT
TGCACCACTGTTTATCCATACCAACTTGATTCCAATTTATTCAAAGGGAC
TGCAATGCGTTTCAAATGGGTTCCCTTTCTTCATTTATTAAAACCAGAGT
ATGTTGCTGAAAAGATTTACACAGCTATCAAGAAAAACCAAGTGACATTA
TATATTCCGAGAATTCTTTATTTCTTGGTTGCCTTACAGAATTTGTTACC
CGAAAGAGCAAATGATATCTTGTATAACTTCTTACAAGCTAATGAAGCAA
TGAAAACATTTTGTGGTACTCGAAATGTGAAGAAATCAGATTag

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_029775	XLOC_029775	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00046645-exon-scaffold_116-1491911889:413056..413170	TCONS_00046645-exon-scaffold_116-1491911889:413056..413170	Clytia hemisphaerica	exon
TCONS_00046645-exon-scaffold_116-1510915933:413056..413170	TCONS_00046645-exon-scaffold_116-1510915933:413056..413170	Clytia hemisphaerica	exon
TCONS_00046645-exon-scaffold_116-1575043694:413056..413170	TCONS_00046645-exon-scaffold_116-1575043694:413056..413170	Clytia hemisphaerica	exon
TCONS_00046645-exon-scaffold_116-1491911889:420700..420918	TCONS_00046645-exon-scaffold_116-1491911889:420700..420918	Clytia hemisphaerica	exon
TCONS_00046645-exon-scaffold_116-1510915933:420700..420918	TCONS_00046645-exon-scaffold_116-1510915933:420700..420918	Clytia hemisphaerica	exon
TCONS_00046645-exon-scaffold_116-1575043694:420700..420918	TCONS_00046645-exon-scaffold_116-1575043694:420700..420918	Clytia hemisphaerica	exon
TCONS_00046645-exon-scaffold_116-1491911889:421200..421649	TCONS_00046645-exon-scaffold_116-1491911889:421200..421649	Clytia hemisphaerica	exon
TCONS_00046645-exon-scaffold_116-1510915933:421200..421649	TCONS_00046645-exon-scaffold_116-1510915933:421200..421649	Clytia hemisphaerica	exon
TCONS_00046645-exon-scaffold_116-1575043694:421200..421649	TCONS_00046645-exon-scaffold_116-1575043694:421200..421649	Clytia hemisphaerica	exon
TCONS_00046645-exon-scaffold_116-1491911889:422591..423115	TCONS_00046645-exon-scaffold_116-1491911889:422591..423115	Clytia hemisphaerica	exon
TCONS_00046645-exon-scaffold_116-1510915933:422591..423115	TCONS_00046645-exon-scaffold_116-1510915933:422591..423115	Clytia hemisphaerica	exon
TCONS_00046645-exon-scaffold_116-1575043694:422591..423115	TCONS_00046645-exon-scaffold_116-1575043694:422591..423115	Clytia hemisphaerica	exon

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00046645-protein	TCONS_00046645-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_116	supercontig	scaffold_116:413056..423115 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
53.963	52.8686	24.2566	22.6837	13.2521	10.4845	8.76543	8.72475	11.4857	10.0518	9.29348	8.02394	6.16624	5.48667	8.71322	7.01426	8.26612	7.22359	6.74524	7.61259	11.788	10.4307	34.6538	32.0609	4.28843	6.77805	6.98947	6.21553	20.703	21.7362

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR002347	SDR_fam
IPR020904	Sc_DH/Rdtase_CS
IPR016040	NAD(P)-bd_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0016491	oxidoreductase activity

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016491	oxidoreductase activity

Blast

[Close]

BLAST of TCONS_00046645 vs. Swiss-Prot (Human)
Match: RDHE2 (Epidermal retinol dehydrogenase 2 OS=Homo sapiens GN=SDR16C5 PE=2 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 3.263e-50
Identity = 99/273 (36.26%), Postives = 157/273 (57.51%), Query Frame = 1

Query:  244 PPKDLTGEIVVLTGAAGDIGSNLAKLLANDGCKMVLLDINKSNLLKLCHEINKTSGNKHDAISFACDITNIDQMKDVCGEIKQKVGDPTMLVNNAGIVAGKYFHDLEYKDFVRTFEVNMLSNFFLVKQFLPAMIEKEHGHVVSVSSILARKGLAGVAEYAASKSAVATFMESLRYEIQVAGKKGINCTTVYPYQLDSNLFKGTAMRFKWVPFLHLLKPEYVAEKIYTAIKKNQVTLYIPRILYFLVALQNLLPERANDILYNFLQANEAMKTF 1062
            P K++ GEIV++TGA   +G  LA   A  G  +VL DINK    + C    +    +  A  + CD +  + +  V  ++K++VGD ++L+NNAGIV GK F D   +   ++F+VN  ++ +  K FLPAMI  +HGH+V +SS     G+ G+A+Y ASK A   F ES+  E  V  +KGI  T V P+ + + +F+G          L +L+P+Y  EKI  AI + ++ LY+P++LYF++ L++ LP +   ++ ++L    AM  F
Sbjct:   34 PRKNVAGEIVLITGAGSGLGRLLALQFARLGSVLVLWDINKEGNEETCKMAREAGATRVHA--YTCDCSQKEGVYRVADQVKKEVGDVSILINNAGIVTGKKFLDCPDELMEKSFDVNFKAHLWTYKAFLPAMIANDHGHLVCISSSAGLSGVNGLADYCASKFAAFGFAESVFVETFVQKQKGIKTTIVCPFFIKTGMFEGCTT--GCPSLLPILEPKYAVEKIVEAILQEKMYLYMPKLLYFMMFLKSFLPLKTGLLIADYLGILHAMDGF 302

The following BLAST results are available for this feature:

BLAST of TCONS_00046645 vs. Swiss-Prot (Human)

BLAST of TCONS_00046645 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RDHE2	3.263e-50	36.26	Epidermal retinol dehydrogenase 2 OS=Homo sapiens ...	[more]

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TCONS_00046645 (transcript) - C. hemisphaerica