TCONS_00046887-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00046887-protein
Unique NameTCONS_00046887-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length285

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00046887-protein ID=TCONS_00046887-protein|Name=TCONS_00046887-protein|organism=Clytia hemisphaerica|type=polypeptide|length=285bp
LADAVGGITKYYKLAFGSFVDKTVAPFIQPAQLDKPCELELTQGACVKTF
GYKHVLDFTDDKNTFQSQINAQKISGNLDTPEGGFDAMMQVASCNTTLQW
RSIDKAHRIVVFVTDALPHIAGDGKLGGITTPNDARCHLTNTNTPKFYDK
LNELDYPSISKLKDSLKNSGIIPIFAVTESVLPVYKFIGEEWKDLNTAVG
KLEGDSSNIVTLIKEKYSEIIKTIRMSDDSPKEIVVKYKVDESCLKPSED
KDFCQEVKAGQTYGFTASLTAVSCPDKKDWDKKHT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029916XLOC_029916Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00046887TCONS_00046887Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015812Integrin_bsu
IPR002369Integrin_bsu_VWA
IPR002035VWF_A
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015812Integrin beta subunitPRINTSPR01186INTEGRINBcoord: 13..32
score: 49.81
coord: 193..217
score: 44.0
coord: 155..178
score: 51.7
coord: 46..65
score: 44.26
coord: 79..101
score: 59.9
IPR002369Integrin beta subunit, VWA domainSMARTSM00187INB_2coord: 1..285
e-value: 3.1E-33
score: 126.4
IPR002369Integrin beta subunit, VWA domainPFAMPF00362Integrin_betacoord: 1..223
e-value: 4.6E-71
score: 239.3
IPR002035von Willebrand factor, type AGENE3D3.40.50.410coord: 1..208
e-value: 5.4E-46
score: 156.7
IPR002035von Willebrand factor, type ASUPERFAMILY53300vWA-likecoord: 2..221
NoneNo IPR availableGENE3D2.60.40.1510coord: 209..284
e-value: 4.6E-8
score: 33.0

Blast
[Close]
BLAST of TCONS_00046887-protein vs. Swiss-Prot (Human)
Match: ITB7 (Integrin beta-7 OS=Homo sapiens GN=ITGB7 PE=1 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 2.174e-60
Identity = 111/278 (39.93%), Postives = 156/278 (56.12%), Query Frame = 0 
Query:    8 ITKYYKLAFGSFVDKTVAPFIQ--PAQLDKPCELELTQGACVKTFGYKHVLDFTDDKNTFQSQINAQKISGNLDTPEGGFDAMMQVASCNTTLQWRSIDKAHRIVVFVTDALPHIAGDGKLGGITTPNDARCHLTNTNTPKFYDKLNELDYPSISKLKDSLKNSGIIPIFAVTESVLPVYKFIGEEWKDL--NTAVGKLEGDSSNIVTLIKEKYSEIIKTIRMSDDS-PKEIVVKYKVDESCLKP------SEDKDFCQEVKAGQTYGFTASLTAVSC 274
            +T   ++ FGSFVDKTV PF+   P++L  PC   L +  C   F + HVL  T D   F+ ++  Q +SGNLD+PEGGFDA++Q A C   + WR++    R++VF +D   H AGDGKLGGI  P+D  CHL +      Y +  E DYPS+ ++  +L  + I PIFAVT + LPVY    +E   L   +AVG+L  DSSN+V LI + Y+ +  T+ +   S P  + + Y  +  C  P      +ED+  C  V+  QT  F  SL A  C
Sbjct:  185 VTHSVRIGFGSFVDKTVLPFVSTVPSKLRHPCPTRLER--CQSPFSFHHVLSLTGDAQAFEREVGRQSVSGNLDSPEGGFDAILQAALCQEQIGWRNVS---RLLVFTSDDTFHTAGDGKLGGIFMPSDGHCHLDSNG---LYSRSTEFDYPSVGQVAQALSAANIQPIFAVTSAALPVY----QELSKLIPKSAVGELSEDSSNVVQLIMDAYNSLSSTVTLEHSSLPPGVHISY--ESQCEGPEKREGKAEDRGQCNHVRINQTVTFWVSLQATHC 448
The following BLAST results are available for this feature:
BLAST of TCONS_00046887-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ITB72.174e-6039.93Integrin beta-7 OS=Homo sapiens GN=ITGB7 PE=1 SV=1[more]
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