TCONS_00046887 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046887
Unique NameTCONS_00046887
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1064

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046887 ID=TCONS_00046887|Name=TCONS_00046887|organism=Clytia hemisphaerica|type=transcript|length=1064bp
TTTAGCGGATGCTGTTGGTGGCATTACAAAATACTACAAATTAGCCTTCG
GTTCCTTTGTTGATAAAACTGTTGCACCATTTATTCAGCCAGCGCAATTA
GATAAACCATGCGAGCTGGAATTAACACAAGGAGCCTGTGTCAAAACGTT
TGGTTATAAACATGTCTTAGATTTTACCGATGACAAAAACACCTTTCAGT
CCCAAATCAATGCTCAAAAGATTTCTGGTAACTTGGACACACCCGAAGGA
GGGTTTGATGCTATGATGCAAGTGGCCTCCTGCAACACAACCTTACAATG
GAGATCAATCGATAAAGCGCATCGTATTGTAGTCTTTGTCACTGATGCAT
TACCACATATTGCTGGAGATGGAAAGCTTGGAGGGATCACAACACCAAAC
GATGCAAGATGTCACTTGACGAATACAAATACCCCAAAGTTCTACGATAA
ATTGAATGAATTGGATTATCCATCTATTTCGAAACTAAAAGATTCGTTAA
AGAATAGCGGTATAATCCCCATATTTGCTGTCACTGAATCAGTGCTACCC
GTGTACAAGTTTATCGGAGAAGAATGGAAGGATTTGAATACAGCTGTCGG
AAAATTGGAAGGCGATTCTTCAAATATTGTCACTCTCATTAAAGAAAAAT
ACTCAgaaattatcaaaacaatccGGATGAGCGACGACTCTCCGAAAGAA
ATCGTCGTCAAATACAAAGTCGACGAAAGTTGCTTGAAACCTTCTGAAGA
CAAGGATTTCTGTCAGGAGGTTAAAGCAGGACAAACATACGGATTTACTG
CTAGTTTAACTGCTGTCTCCTGCCCTGATAAAAAAGATTGGGATAAAAAA
CACACGTAAGTTTAATTATGTTatttaaaatacgaaaatctaAATGTCCA
AGTAGACATGAGATTGGCTcgttagctttttctgatttttggcacaatga
tgcaaaatggcaatggcgaagaaaaaaattttttggccaaaaatgccgga
aatatgccggaaaaaactTAAATTCCGCAACGAGTTTTGATGAGCACAAT
TGCATTTTTCTTtc
Run BLAST on NCBI

protein sequence of TCONS_00046887-protein

>TCONS_00046887-protein ID=TCONS_00046887-protein|Name=TCONS_00046887-protein|organism=Clytia hemisphaerica|type=polypeptide|length=285bp
LADAVGGITKYYKLAFGSFVDKTVAPFIQPAQLDKPCELELTQGACVKTF
GYKHVLDFTDDKNTFQSQINAQKISGNLDTPEGGFDAMMQVASCNTTLQW
RSIDKAHRIVVFVTDALPHIAGDGKLGGITTPNDARCHLTNTNTPKFYDK
LNELDYPSISKLKDSLKNSGIIPIFAVTESVLPVYKFIGEEWKDLNTAVG
KLEGDSSNIVTLIKEKYSEIIKTIRMSDDSPKEIVVKYKVDESCLKPSED
KDFCQEVKAGQTYGFTASLTAVSCPDKKDWDKKHT
Run BLAST on NCBI

transcript from alignment at scaffold_118:118393..121791+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046887 ID=TCONS_00046887|Name=TCONS_00046887|organism=Clytia hemisphaerica|type=transcript|length=3399bp|location=Sequence derived from alignment at scaffold_118:118393..121791+ (Clytia hemisphaerica)
TTTAGCGGATGCTGTTGGTGGCATTACAAAATACTACAAATTAGCCTTCG
GTTCCTTTGTTGATAAAACTGTTGCACCATTTATTCAGCCAGCGCAATTG
TAAGTCCATTATTTTTTTCCAGTTGATTTCATTGCATTGGGATCCTGGTC
CTTTTCTCACCATGATGGAGATATTAATTCTCAAATGTgcatttttttgc
ctttttcgaaAGAGCTTATGGTTACTGATGTATATTCTACCATATTCGTT
CTGCAGAGATAAACCATGCGAGCTGGAATTAACACAAGGAGCCTGTGTCA
AAACGTTTGGTTATAAACATGTCTTAGATTTTACCGATGACAAAAACACC
TTTCAGGTAAACTTAGTAATATAAACCTAATATAACTTactaaattttct
taaaatcacCAAATCTCTAATAATAAAAGTGGAGCTAAAAGGTTCTAAAT
GAAAAGCTGACTGGTTGTCCTACTTATTGATGTAAGAAAATAACgctatc
tttcaaaggaaattATAATGTGTTGCCATAATGTCAGAACACCGtcttaa
aaaataattgaattttgTATGTAAACTTTCCATGTTGTTCTTAGCCACGA
AAAAACCTCTACAACTCCAATAACCTCAAAACCCCGAATGTCTCTATAAC
TCCCTTGCCATTGGAGTTATAGAgactcttttgtatttttggcaCTCCCA
CAGCTCATAGGTTGATCTTCAATTGAACttgtctttttttaaacatgatt
ttgttttaaatattatttAGTCCCAAATCAATGCTCAAAAGATTTCTGGT
AACTTGGACACACCCGAAGGAGGGTTTGATGCTATGATGCAAGTGGCCTC
CTGCAACACAACCTTACAATGGAGATCAATCGATAAAGCGCATCGTATTG
TAGTCTTTGTCACTGATGCATTACCACATATTGCTGGAGATGGAAAGGTA
GGTTTTTAGCTTTCCTCCTTTCTCACCTCCATCCCCTCCCTTTTTGTTGA
TGTTCTTTATATCTTATATAATCCCTCTTGAGACGGTAAAGCCCGGCAAT
AAAGAATTCCGTAGGGAATTtcccgtccatatagtacgtacgcactaagg
ggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNAGGGggggtttgaaaattttactgaatttaaaaga
agaggggcttgtgaaaatttcaaataaaagggaTGGCTTGGACAAAAAGA
GGGGGGGTTAATTTTTAAGGGCGGGCTTGAAAGATTTGGCAATTTGGAAA
AGAgtgttttccattcatttttaaatttctcaacaatTATTATATTTCCA
TTCATTTGAATAAAGGAAATACTCTGTTTCTACAACTCTTGATGGAGTAT
GTTGCTTTTTCAACCTTTGTAAGACAGCTGCTTTTGTAAAAGGTTTagta
aaagataaaaaaaaagaggggggttaaACTAAAACCTGGGAAAAAAAGGG
GGGTCGagaaatttccatttttaagaGGTTAATACCCCTCTGCCCACTAT
TGATTCCCAATAAAGAGGAAATGCATATGCtactctgccacccaaatctc
gtGAGTGAATATAGTTAAACATAAATTCTTATTTCTGTGCATATATTATC
CCAGCTCTGAAATTCTTCAAACTAAAAACAATAGGTAGTCAGTATTTTCG
TGAAGATGAGTATAAAGAAAGTCTTCCCATATTTTGAAGAAGCAGCTAAG
TTTTTTTATTTGGCCTCTTTTTGCCAGCTTGGAGGGATCACAACACCAAA
CGATGCAAGATGTCACTTGACGAATACAAATACCCCAAAGTTCTACGATA
AATTGAATGAATTGGTGAGTTGAATTGGTTGTTCACTCTTTACAGAGTGG
GCGCCTATACTTTAAGCAGGTATCTGGATGTTCACTCAATCTATTTAGAA
GAGTGTGTAAAGATAAGTTTTTATCCTTTAATATAAATTAGGTTGTATTA
TTTTAAAAGAGGACcttgttttattttcaccatggattttttaattttta
tgaggAAAGTAGGCTAAGAATAGGGAACAAAAAATTTCGGAGGCAGCCTT
CTGACATCctaaatggtcggatttggcacAAATTTGACACATTTGTTCCT
TGGTTCAATatcattttccaaaaatatgattttctGGGGTCTTGGGATGA
GTTTTTTTACCAAAACGTAGCTGAAACTTAGAGATCCGACTGAAATTTAC
ACACTTGTTCCTTTGGTGATTACCCGAGGGAGTTTTTTCATTTCTccaga
aaattttatttttggtgcCGAGGGACGAGCATTTCATTATTGCTGCGATT
AGGCGCACGTTTAACTTCCTCCGAAATGCActattttttcttcatcagcA
TATTTCAACTCAGACAGGCTTTGTTGAAAATTATATATTCATTTTCCACT
TACAGGATTATCCATCTATTTCGAAACTAAAAGATTCGTTAAAGAATAGC
GGTATAATCCCCATATTTGCTGTCACTGAATCAGTGCTACCCGTGTACAA
GGTATGTATTTTGTGGTTCTGTTACGCTTTAAAACGGTACTTGGGTTTAT
AAAATTAATGGATTTCTTCTGATGCCTTTAGTGGTCAATGTCAAGATTGT
TGGgtgaattttttagaattaaaaataaaagaatatacatATAATCTTAC
TTTACAGTTTATCGGAGAAGAATGGAAGGATTTGAATACAGCTGTCGGAA
AATTGGAAGGCGATTCTTCAAATATTGTCACTCTCATTAAAGAAAAATAC
TCAGTGAgctcattgattttttttttccgctacctatttttattttgtct
ctATTGGCAAATTTTTTGTACGTAAAGTTCTGTAGAAAATGATAATCTTC
TTTAACCTTTTTAAAACTCGTTTCTATCTTCGGGTTGCAggaaattatca
aaacaatccGGATGAGCGACGACTCTCCGAAAGAAATCGTCGTCAAATAC
AAAGTCGACGAAAGTTGCTTGAAACCTTCTGAAGACAAGGATTTCTGTCA
GGAGGTTAAAGCAGGACAAACATACGGATTTACTGCTAGTTTAACTGCTG
TCTCCTGCCCTGATAAAAAAGATTGGGATAAAAAACACACGTAAGTTTAA
TTATGTTatttaaaatacgaaaatctaAATGTCCAAGTAGACATGAGATT
GGCTcgttagctttttctgatttttggcacaatgatgcaaaatggcaatg
gcgaagaaaaaaattttttggccaaaaatgccggaaatatgccggaaaaa
actTAAATTCCGCAACGAGTTTTGATGAGCACAATTGCATTTTTCTTtc

Coding sequence (CDS) from alignment at scaffold_118:118393..121791+

>TCONS_00046887 ID=TCONS_00046887|Name=TCONS_00046887|organism=Clytia hemisphaerica|type=CDS|length=6006bp|location=Sequence derived from alignment at scaffold_118:118393..121791+ (Clytia hemisphaerica)
TTAGCGGATGCTGTTGGTGGCATTACAAAATACTACAAATTAGCCTTCGG
TTCCTTTGTTGATAAAACTGTTGCACCATTTATTCAGCCAGCGCAATTAG
ATAAACCATGCGAGCTGGAATTAACACAAGGAGCCTGTGTCAAAACGTTT
GGTTATAAACATGTCTTAGATTTTACCGATGACAAAAACACCTTTCAGTC
CCAAATCAATGCTCAAAAGATTTCTGGTAACTTGGACACACCCGAAGGAG
GGTTTGATGCTATGATGCAAGTGGCCTCCTGCAACACAACCTTACAATGG
AGATCAATCGATAAAGCGCATCGTATTGTAGTCTTTGTCACTGATGCATT
ACCACATATTGCTGGAGATGGAAAGCTTGGAGGGATCACAACACCAAACG
ATGCAAGATGTCACTTGACGAATACAAATACCCCAAAGTTCTACGATAAA
TTGAATGAATTGGATTATCCATCTATTTCGAAACTAAAAGATTCGTTAAA
GAATAGCGGTATAATCCCCATATTTGCTGTCACTGAATCAGTGCTACCCG
TGTACAAGTTTATCGGAGAAGAATGGAAGGATTTGAATACAGCTGTCGGA
AAATTGGAAGGCGATTCTTCAAATATTGTCACTCTCATTAAAGAAAAATA
CTCAgaaattatcaaaacaatccGGATGAGCGACGACTCTCCGAAAGAAA
TCGTCGTCAAATACAAAGTCGACGAAAGTTGCTTGAAACCTTCTGAAGAC
AAGGATTTCTGTCAGGAGGTTAAAGCAGGACAAACATACGGATTTACTGC
TAGTTTAACTGCTGTCTCCTGCCCTGATAAAAAAGATTGGGATAAAAAAC
ACACGTAATTAGCGGATGCTGTTGGTGGCATTACAAAATACTACAAATTA
GCCTTCGGTTCCTTTGTTGATAAAACTGTTGCACCATTTATTCAGCCAGC
GCAATTAGATAAACCATGCGAGCTGGAATTAACACAAGGAGCCTGTGTCA
AAACGTTTGGTTATAAACATGTCTTAGATTTTACCGATGACAAAAACACC
TTTCAGTCCCAAATCAATGCTCAAAAGATTTCTGGTAACTTGGACACACC
CGAAGGAGGGTTTGATGCTATGATGCAAGTGGCCTCCTGCAACACAACCT
TACAATGGAGATCAATCGATAAAGCGCATCGTATTGTAGTCTTTGTCACT
GATGCATTACCACATATTGCTGGAGATGGAAAGCTTGGAGGGATCACAAC
ACCAAACGATGCAAGATGTCACTTGACGAATACAAATACCCCAAAGTTCT
ACGATAAATTGAATGAATTGGATTATCCATCTATTTCGAAACTAAAAGAT
TCGTTAAAGAATAGCGGTATAATCCCCATATTTGCTGTCACTGAATCAGT
GCTACCCGTGTACAAGTTTATCGGAGAAGAATGGAAGGATTTGAATACAG
CTGTCGGAAAATTGGAAGGCGATTCTTCAAATATTGTCACTCTCATTAAA
GAAAAATACTCAgaaattatcaaaacaatccGGATGAGCGACGACTCTCC
GAAAGAAATCGTCGTCAAATACAAAGTCGACGAAAGTTGCTTGAAACCTT
CTGAAGACAAGGATTTCTGTCAGGAGGTTAAAGCAGGACAAACATACGGA
TTTACTGCTAGTTTAACTGCTGTCTCCTGCCCTGATAAAAAAGATTGGGA
TAAAAAACACACGTAATTAGCGGATGCTGTTGGTGGCATTACAAAATACT
ACAAATTAGCCTTCGGTTCCTTTGTTGATAAAACTGTTGCACCATTTATT
CAGCCAGCGCAATTAGATAAACCATGCGAGCTGGAATTAACACAAGGAGC
CTGTGTCAAAACGTTTGGTTATAAACATGTCTTAGATTTTACCGATGACA
AAAACACCTTTCAGTCCCAAATCAATGCTCAAAAGATTTCTGGTAACTTG
GACACACCCGAAGGAGGGTTTGATGCTATGATGCAAGTGGCCTCCTGCAA
CACAACCTTACAATGGAGATCAATCGATAAAGCGCATCGTATTGTAGTCT
TTGTCACTGATGCATTACCACATATTGCTGGAGATGGAAAGCTTGGAGGG
ATCACAACACCAAACGATGCAAGATGTCACTTGACGAATACAAATACCCC
AAAGTTCTACGATAAATTGAATGAATTGGATTATCCATCTATTTCGAAAC
TAAAAGATTCGTTAAAGAATAGCGGTATAATCCCCATATTTGCTGTCACT
GAATCAGTGCTACCCGTGTACAAGTTTATCGGAGAAGAATGGAAGGATTT
GAATACAGCTGTCGGAAAATTGGAAGGCGATTCTTCAAATATTGTCACTC
TCATTAAAGAAAAATACTCAgaaattatcaaaacaatccGGATGAGCGAC
GACTCTCCGAAAGAAATCGTCGTCAAATACAAAGTCGACGAAAGTTGCTT
GAAACCTTCTGAAGACAAGGATTTCTGTCAGGAGGTTAAAGCAGGACAAA
CATACGGATTTACTGCTAGTTTAACTGCTGTCTCCTGCCCTGATAAAAAA
GATTGGGATAAAAAACACACGTAATTAGCGGATGCTGTTGGTGGCATTAC
AAAATACTACAAATTAGCCTTCGGTTCCTTTGTTGATAAAACTGTTGCAC
CATTTATTCAGCCAGCGCAATTAGATAAACCATGCGAGCTGGAATTAACA
CAAGGAGCCTGTGTCAAAACGTTTGGTTATAAACATGTCTTAGATTTTAC
CGATGACAAAAACACCTTTCAGTCCCAAATCAATGCTCAAAAGATTTCTG
GTAACTTGGACACACCCGAAGGAGGGTTTGATGCTATGATGCAAGTGGCC
TCCTGCAACACAACCTTACAATGGAGATCAATCGATAAAGCGCATCGTAT
TGTAGTCTTTGTCACTGATGCATTACCACATATTGCTGGAGATGGAAAGC
TTGGAGGGATCACAACACCAAACGATGCAAGATGTCACTTGACGAATACA
AATACCCCAAAGTTCTACGATAAATTGAATGAATTGGATTATCCATCTAT
TTCGAAACTAAAAGATTCGTTAAAGAATAGCGGTATAATCCCCATATTTG
CTGTCACTGAATCAGTGCTACCCGTGTACAAGTTTATCGGAGAAGAATGG
AAGGATTTGAATACAGCTGTCGGAAAATTGGAAGGCGATTCTTCAAATAT
TGTCACTCTCATTAAAGAAAAATACTCAgaaattatcaaaacaatccGGA
TGAGCGACGACTCTCCGAAAGAAATCGTCGTCAAATACAAAGTCGACGAA
AGTTGCTTGAAACCTTCTGAAGACAAGGATTTCTGTCAGGAGGTTAAAGC
AGGACAAACATACGGATTTACTGCTAGTTTAACTGCTGTCTCCTGCCCTG
ATAAAAAAGATTGGGATAAAAAACACACGTAATTAGCGGATGCTGTTGGT
GGCATTACAAAATACTACAAATTAGCCTTCGGTTCCTTTGTTGATAAAAC
TGTTGCACCATTTATTCAGCCAGCGCAATTAGATAAACCATGCGAGCTGG
AATTAACACAAGGAGCCTGTGTCAAAACGTTTGGTTATAAACATGTCTTA
GATTTTACCGATGACAAAAACACCTTTCAGTCCCAAATCAATGCTCAAAA
GATTTCTGGTAACTTGGACACACCCGAAGGAGGGTTTGATGCTATGATGC
AAGTGGCCTCCTGCAACACAACCTTACAATGGAGATCAATCGATAAAGCG
CATCGTATTGTAGTCTTTGTCACTGATGCATTACCACATATTGCTGGAGA
TGGAAAGCTTGGAGGGATCACAACACCAAACGATGCAAGATGTCACTTGA
CGAATACAAATACCCCAAAGTTCTACGATAAATTGAATGAATTGGATTAT
CCATCTATTTCGAAACTAAAAGATTCGTTAAAGAATAGCGGTATAATCCC
CATATTTGCTGTCACTGAATCAGTGCTACCCGTGTACAAGTTTATCGGAG
AAGAATGGAAGGATTTGAATACAGCTGTCGGAAAATTGGAAGGCGATTCT
TCAAATATTGTCACTCTCATTAAAGAAAAATACTCAgaaattatcaaaac
aatccGGATGAGCGACGACTCTCCGAAAGAAATCGTCGTCAAATACAAAG
TCGACGAAAGTTGCTTGAAACCTTCTGAAGACAAGGATTTCTGTCAGGAG
GTTAAAGCAGGACAAACATACGGATTTACTGCTAGTTTAACTGCTGTCTC
CTGCCCTGATAAAAAAGATTGGGATAAAAAACACACGTAATTAGCGGATG
CTGTTGGTGGCATTACAAAATACTACAAATTAGCCTTCGGTTCCTTTGTT
GATAAAACTGTTGCACCATTTATTCAGCCAGCGCAATTAGATAAACCATG
CGAGCTGGAATTAACACAAGGAGCCTGTGTCAAAACGTTTGGTTATAAAC
ATGTCTTAGATTTTACCGATGACAAAAACACCTTTCAGTCCCAAATCAAT
GCTCAAAAGATTTCTGGTAACTTGGACACACCCGAAGGAGGGTTTGATGC
TATGATGCAAGTGGCCTCCTGCAACACAACCTTACAATGGAGATCAATCG
ATAAAGCGCATCGTATTGTAGTCTTTGTCACTGATGCATTACCACATATT
GCTGGAGATGGAAAGCTTGGAGGGATCACAACACCAAACGATGCAAGATG
TCACTTGACGAATACAAATACCCCAAAGTTCTACGATAAATTGAATGAAT
TGGATTATCCATCTATTTCGAAACTAAAAGATTCGTTAAAGAATAGCGGT
ATAATCCCCATATTTGCTGTCACTGAATCAGTGCTACCCGTGTACAAGTT
TATCGGAGAAGAATGGAAGGATTTGAATACAGCTGTCGGAAAATTGGAAG
GCGATTCTTCAAATATTGTCACTCTCATTAAAGAAAAATACTCAgaaatt
atcaaaacaatccGGATGAGCGACGACTCTCCGAAAGAAATCGTCGTCAA
ATACAAAGTCGACGAAAGTTGCTTGAAACCTTCTGAAGACAAGGATTTCT
GTCAGGAGGTTAAAGCAGGACAAACATACGGATTTACTGCTAGTTTAACT
GCTGTCTCCTGCCCTGATAAAAAAGATTGGGATAAAAAACACACGTAATT
AGCGGATGCTGTTGGTGGCATTACAAAATACTACAAATTAGCCTTCGGTT
CCTTTGTTGATAAAACTGTTGCACCATTTATTCAGCCAGCGCAATTAGAT
AAACCATGCGAGCTGGAATTAACACAAGGAGCCTGTGTCAAAACGTTTGG
TTATAAACATGTCTTAGATTTTACCGATGACAAAAACACCTTTCAGTCCC
AAATCAATGCTCAAAAGATTTCTGGTAACTTGGACACACCCGAAGGAGGG
TTTGATGCTATGATGCAAGTGGCCTCCTGCAACACAACCTTACAATGGAG
ATCAATCGATAAAGCGCATCGTATTGTAGTCTTTGTCACTGATGCATTAC
CACATATTGCTGGAGATGGAAAGCTTGGAGGGATCACAACACCAAACGAT
GCAAGATGTCACTTGACGAATACAAATACCCCAAAGTTCTACGATAAATT
GAATGAATTGGATTATCCATCTATTTCGAAACTAAAAGATTCGTTAAAGA
ATAGCGGTATAATCCCCATATTTGCTGTCACTGAATCAGTGCTACCCGTG
TACAAGTTTATCGGAGAAGAATGGAAGGATTTGAATACAGCTGTCGGAAA
ATTGGAAGGCGATTCTTCAAATATTGTCACTCTCATTAAAGAAAAATACT
CAgaaattatcaaaacaatccGGATGAGCGACGACTCTCCGAAAGAAATC
GTCGTCAAATACAAAGTCGACGAAAGTTGCTTGAAACCTTCTGAAGACAA
GGATTTCTGTCAGGAGGTTAAAGCAGGACAAACATACGGATTTACTGCTA
GTTTAACTGCTGTCTCCTGCCCTGATAAAAAAGATTGGGATAAAAAACAC
ACGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029916XLOC_029916Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046887-proteinTCONS_00046887-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046887-exon-scaffold_118-1491911889:118393..118491TCONS_00046887-exon-scaffold_118-1491911889:118393..118491Clytia hemisphaericaexon
TCONS_00046887-exon-scaffold_118-1510915933:118393..118491TCONS_00046887-exon-scaffold_118-1510915933:118393..118491Clytia hemisphaericaexon
TCONS_00046887-exon-scaffold_118-1575043694:118393..118491TCONS_00046887-exon-scaffold_118-1575043694:118393..118491Clytia hemisphaericaexon
TCONS_00046887-exon-scaffold_118-1491911889:118649..118748TCONS_00046887-exon-scaffold_118-1491911889:118649..118748Clytia hemisphaericaexon
TCONS_00046887-exon-scaffold_118-1510915933:118649..118748TCONS_00046887-exon-scaffold_118-1510915933:118649..118748Clytia hemisphaericaexon
TCONS_00046887-exon-scaffold_118-1575043694:118649..118748TCONS_00046887-exon-scaffold_118-1575043694:118649..118748Clytia hemisphaericaexon
TCONS_00046887-exon-scaffold_118-1491911889:119163..119339TCONS_00046887-exon-scaffold_118-1491911889:119163..119339Clytia hemisphaericaexon
TCONS_00046887-exon-scaffold_118-1510915933:119163..119339TCONS_00046887-exon-scaffold_118-1510915933:119163..119339Clytia hemisphaericaexon
TCONS_00046887-exon-scaffold_118-1575043694:119163..119339TCONS_00046887-exon-scaffold_118-1575043694:119163..119339Clytia hemisphaericaexon
TCONS_00046887-exon-scaffold_118-1491911889:120220..120306TCONS_00046887-exon-scaffold_118-1491911889:120220..120306Clytia hemisphaericaexon
TCONS_00046887-exon-scaffold_118-1510915933:120220..120306TCONS_00046887-exon-scaffold_118-1510915933:120220..120306Clytia hemisphaericaexon
TCONS_00046887-exon-scaffold_118-1575043694:120220..120306TCONS_00046887-exon-scaffold_118-1575043694:120220..120306Clytia hemisphaericaexon
TCONS_00046887-exon-scaffold_118-1491911889:120898..120993TCONS_00046887-exon-scaffold_118-1491911889:120898..120993Clytia hemisphaericaexon
TCONS_00046887-exon-scaffold_118-1510915933:120898..120993TCONS_00046887-exon-scaffold_118-1510915933:120898..120993Clytia hemisphaericaexon
TCONS_00046887-exon-scaffold_118-1575043694:120898..120993TCONS_00046887-exon-scaffold_118-1575043694:120898..120993Clytia hemisphaericaexon
TCONS_00046887-exon-scaffold_118-1491911889:121150..121245TCONS_00046887-exon-scaffold_118-1491911889:121150..121245Clytia hemisphaericaexon
TCONS_00046887-exon-scaffold_118-1510915933:121150..121245TCONS_00046887-exon-scaffold_118-1510915933:121150..121245Clytia hemisphaericaexon
TCONS_00046887-exon-scaffold_118-1575043694:121150..121245TCONS_00046887-exon-scaffold_118-1575043694:121150..121245Clytia hemisphaericaexon
TCONS_00046887-exon-scaffold_118-1491911889:121383..121791TCONS_00046887-exon-scaffold_118-1491911889:121383..121791Clytia hemisphaericaexon
TCONS_00046887-exon-scaffold_118-1510915933:121383..121791TCONS_00046887-exon-scaffold_118-1510915933:121383..121791Clytia hemisphaericaexon
TCONS_00046887-exon-scaffold_118-1575043694:121383..121791TCONS_00046887-exon-scaffold_118-1575043694:121383..121791Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_118supercontigscaffold_118:118393..121791 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
49.6273	47.828	122.9	129.038	191.319	150.077	163.671	181.681	117.802	151.492	107.854	83.5451	103.08	97.0888	77.3956	89.6488	132.066	149.05	73.8834	104.716	96.1965	102.795	78.5338	91.6122	100.952	111.357	399.93	382.242	388.01	431.739
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR015812Integrin_bsu
IPR002369Integrin_bsu_VWA
IPR002035VWF_A
Blast
[Close]
BLAST of TCONS_00046887 vs. Swiss-Prot (Human)
Match: ITB7 (Integrin beta-7 OS=Homo sapiens GN=ITGB7 PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 1.142e-58
Identity = 111/278 (39.93%), Postives = 156/278 (56.12%), Query Frame = 2 
Query:   23 ITKYYKLAFGSFVDKTVAPFIQ--PAQLDKPCELELTQGACVKTFGYKHVLDFTDDKNTFQSQINAQKISGNLDTPEGGFDAMMQVASCNTTLQWRSIDKAHRIVVFVTDALPHIAGDGKLGGITTPNDARCHLTNTNTPKFYDKLNELDYPSISKLKDSLKNSGIIPIFAVTESVLPVYKFIGEEWKDL--NTAVGKLEGDSSNIVTLIKEKYSEIIKTIRMSDDS-PKEIVVKYKVDESCLKP------SEDKDFCQEVKAGQTYGFTASLTAVSC 823
            +T   ++ FGSFVDKTV PF+   P++L  PC   L +  C   F + HVL  T D   F+ ++  Q +SGNLD+PEGGFDA++Q A C   + WR++    R++VF +D   H AGDGKLGGI  P+D  CHL +      Y +  E DYPS+ ++  +L  + I PIFAVT + LPVY    +E   L   +AVG+L  DSSN+V LI + Y+ +  T+ +   S P  + + Y  +  C  P      +ED+  C  V+  QT  F  SL A  C
Sbjct:  185 VTHSVRIGFGSFVDKTVLPFVSTVPSKLRHPCPTRLER--CQSPFSFHHVLSLTGDAQAFEREVGRQSVSGNLDSPEGGFDAILQAALCQEQIGWRNVS---RLLVFTSDDTFHTAGDGKLGGIFMPSDGHCHLDSNG---LYSRSTEFDYPSVGQVAQALSAANIQPIFAVTSAALPVY----QELSKLIPKSAVGELSEDSSNVVQLIMDAYNSLSSTVTLEHSSLPPGVHISY--ESQCEGPEKREGKAEDRGQCNHVRINQTVTFWVSLQATHC 448
The following BLAST results are available for this feature:
BLAST of TCONS_00046887 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ITB71.142e-5839.93Integrin beta-7 OS=Homo sapiens GN=ITGB7 PE=1 SV=1[more]
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