TCONS_00046888-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00046888-protein
Unique NameTCONS_00046888-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length264

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00046888-protein ID=TCONS_00046888-protein|Name=TCONS_00046888-protein|organism=Clytia hemisphaerica|type=polypeptide|length=264bp
KSLFFSFQNPDEKISGKYCECNNYGCDRYDGKLCGGPGRGECDCGECKCT
EAFLGDNCGEVNCTLGEKNCIGPDGLKCSGKGQCACDTCDCERGYGGKYC
QKCVSCPSKCSNYKDCVQCVAWDEGPFAEDNTCEQRCSQYDIQMVNETRA
DCEYKDDNNCFFHYRFETINDANETILVQKDKRCIIVFTKPTPILAIVLG
IIGGLILLALILLLLWKLLITAYDNYEYQKFLKENQNPNWANTDNPIYKP
SQTNYQNPTYAGKS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029917XLOC_029917Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00046888TCONS_00046888Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015812Integrin_bsu
IPR012896Integrin_bsu_tail
IPR014836Integrin_bsu_cyt_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015812Integrin beta subunitPRINTSPR01186INTEGRINBcoord: 192..209
score: 33.33
coord: 209..227
score: 47.95
coord: 78..91
score: 54.23
coord: 244..254
score: 45.12
IPR015812Integrin beta subunitPROSITEPS00243INTEGRIN_BETAcoord: 78..91
IPR012896Integrin beta subunit, tailSMARTSM01242Integrin_B_tail_2coord: 110..188
e-value: 1.8E-14
score: 64.1
IPR012896Integrin beta subunit, tailPFAMPF07965Integrin_B_tailcoord: 110..184
e-value: 4.2E-14
score: 52.7
IPR012896Integrin beta subunit, tailSUPERFAMILY69687Integrin beta tail domaincoord: 109..184
IPR014836Integrin beta subunit, cytoplasmic domainSMARTSM01241Integrin_b_cyt_2coord: 217..263
e-value: 5.0E-14
score: 62.6
IPR014836Integrin beta subunit, cytoplasmic domainGENE3D1.20.5.630coord: 223..261
e-value: 4.0E-15
score: 54.7
IPR014836Integrin beta subunit, cytoplasmic domainPFAMPF08725Integrin_b_cytcoord: 217..260
e-value: 7.4E-16
score: 57.4
NoneNo IPR availableGENE3D2.60.40.1510coord: 62..101
e-value: 1.4E-5
score: 24.9
NoneNo IPR availableGENE3D1.20.5.100coord: 189..222
e-value: 7.8E-11
score: 41.1
NoneNo IPR availableGENE3D2.10.25.10coord: 21..61
e-value: 0.0015
score: 18.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 242..264
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 68..107
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 20..59

Blast
[Close]
BLAST of TCONS_00046888-protein vs. Swiss-Prot (Human)
Match: ITB2 (Integrin beta-2 OS=Homo sapiens GN=ITGB2 PE=1 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 1.276e-51
Identity = 92/253 (36.36%), Postives = 140/253 (55.34%), Query Frame = 0 
Query:   10 PDEKISGKYCECNNYGCDRYDGKLCGGPGRGECDCGECKCTEAFLGDNCGEVNCTLGEKNCIGPDGLKCSGKGQCACDTCDCERGYGGKYCQKCVSCPSKCSNYKDCVQCVAWDEGPFAEDNTCEQRCSQYDIQMVNETRADCEYKDDNNCFFHYRFETINDANE-TILVQKDKRCIIVFTKPTPILAIVLGIIGGLILLALILLLLWKLLITAYDNYEYQKFLKENQNPNWANTDNPIYKPSQTNYQNPTYA 261
            P + I G+YCEC+   C+RY+G++CGGPGRG C CG+C+C   F G  C    C    + C+ P  ++CSG+G+C C+ C+C  GY    CQ+C  CPS C  Y  C +C+ +++GPF ++  C   C    +         C+ +D   C+  Y  E  +  +   I V + + C+     P  I AIV G + G++L+ ++LL++WK LI   D  EY++F KE     W N DNP++K + T   NP +A
Sbjct:  525 PGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSAC---QCERTTEGCLNPRRVECSGRGRCRCNVCECHSGYQLPLCQECPGCPSPCGKYISCAECLKFEKGPFGKN--CSAACPGLQLSNNPVKGRTCKERDSEGCWVAYTLEQQDGMDRYLIYVDESRECV---AGPN-IAAIVGGTVAGIVLIGILLLVIWKALIHLSDLREYRRFEKEKLKSQW-NNDNPLFKSATTTVMNPKFA 767
The following BLAST results are available for this feature:
BLAST of TCONS_00046888-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ITB21.276e-5136.36Integrin beta-2 OS=Homo sapiens GN=ITGB2 PE=1 SV=2[more]
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