TCONS_00046888 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046888
Unique NameTCONS_00046888
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2367

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046888 ID=TCONS_00046888|Name=TCONS_00046888|organism=Clytia hemisphaerica|type=transcript|length=2367bp
AGAAATCGCTATTTTTCTCGTTTCAGAACCCTGATGAAAAGATTTCTGGC
AAATATTGTGAATGTAACAATTACGGGTGTGATCGTTATGACGGCAAACT
ATGTGGAGGACCTGGACGTGGAGAGTGCGACTGTGGTGAATGCAAGTGTA
CCGAAGCCTTCTTGGGTGATAATTGTGGCGAAGTTAATTGCACGTTGggc
gaaaaaaattgtattggtCCAGATGGGTTGAAATGCAGTGGTAAAGGACA
GTGCGCGTGCGATACGTGTGATTGCGAACGAGGTTATGGTGGTAAATATT
GCCAAAAATGTGTGtCTTGTCCAAGTAAATGTTCCAACTACAAAGATTGC
GTTCAATGTGTTGCTTGGGACGAAGGACCATTCGCCGAAGACAACACGTG
TGAACAGAGATGTTCGCAATACGATATTCAAATGGTGAACGAAACCAGAG
CTGACTGCGAATACAAAGACGACAATAACTGTTTCTTCCACTATCGCTTT
GAAACAATCAATGACGCCAACGAAACCATTTTAGTCCAAAAAGATAAACG
CTGTATCATTGTGTTCACAAAGCCAACGCCCATCCTCGCCATTGTCCTTG
GTATCATCGGAGGTCTCATTTTATTGGCTCTCATCTTGTTGTTGCTATGG
AAACTCTTGATCACAGCTTACGATAACTACGAATATCAGAAATTcttgaa
agaaaatcaaaatccaaACTGGGCAAATACTGACAATCCGATTTACAAAC
CATCCCAGACTAACTATCAAAACCCTACATACGCTGGTAAATCATAGTGG
TTTCGCTTTACTAATCATCTATCATGACTTGAAACAGATCTTTCAAGTTT
TTAAACAGCCCGAGAACCTTCAACATTCACTCGTAATCTTTACTTCTTCG
AAATCTTTTCGATGAGAAAAGTAGATGAGAGCTTTCCGAATCGATGTATC
AAAAATGATACTGTGTCAGTCAAGGTTACGAAAGAATGAGAATGACGTTG
GAAAATATGTACTATagacttgtttttatttttaacacCGATTTTATATA
TAACTTAAGTAGAAATATTTGACCCTTATATGTTGCTTAAGATACGTTAT
ACCTTTGCATGCTCCGTTTCACAAAATGCTGATTTCTtatgattttctaa
ttttatttttgatgtaaATTATACTTCAATTGATTAAAAATACTGTTTAT
TGTTACTATTATTAAGGTGCTTTTTATATGCTtcgtatttttttcattat
taatattatattataacacccccttctcacagacccactgggacccgttc
ccactgaaaaattggccaaaatatcgtccccggtgaaaattattcttcaa
tttttgtcccttttgaaaataatcaaataaaccaatcctcactgcaaaat
attatgttattttttccatccccactgaattatctgacttaaaaacaaaa
gaattgacatCCCCAGCAATAAAacatatgggaatatcaatctccatcga
atttcagtccgttattttatccccactggctgaaaaaatcctaccgagtC
TGTGAGAAGACGGTGTATtataattttggattttcttatttggtaaAAAG
TGCTTCAAAATACTGTTCAAACTTGTAGGTATTGTAGAATCATATTTAGG
TTAGGATCTATCCAGAGGATTTTCTTAAGTAGTGTTCTGAACAGGGCTCG
CCTtcgttttaaagattttttaacatTATCCTAACATCGACACTGCgtat
ttatttcttattttgtcTGTATTTATACTTTACGCTATTTCCCTGTTTAT
CATTCTAACCAAACACACGCTCTAACCTCAATTTCCATATAACAAAACTC
TAAACAACTTTGGAAAACTTTAAGACTGTCGTTTGTATATAAATCGTGAC
AGTTAGTAACATTGCATTCATGATAAGAGGTGAATTAAATATTTGTCAAT
GGTGATTCGTTGTGAGCACTGCTGTTCGACATCTGTTCGTCATAATGATT
TCATTAATGACTAGCGATAAGTGCACAAAAGATCTagacaaaatttattt
ttttcttaaaaatcattATTGCCTATAAATTTGAATATGTATAAGTTGAT
ctattttttaaaatatgctTTTTAGAAATTCTAACCTTTACATTACTGTG
TCATTTTCTTGGCTTTTCATCAAATAGATAATAAGTTCTAAGATTTCGAG
AATAAACTGTTCAAAAAGTTTCGTCACAACTTTATGACTATAAATTGTAA
GAATCATGACGATTCAACCGCAGACAGTCACTTTTTTCGTCATCTAGAGC
TAGATCTGATTTATCATACCATAGGTCAGAAGATTACTAAtcatttgcaa
aattaaattgaCTGTGC
Run BLAST on NCBI

protein sequence of TCONS_00046888-protein

>TCONS_00046888-protein ID=TCONS_00046888-protein|Name=TCONS_00046888-protein|organism=Clytia hemisphaerica|type=polypeptide|length=264bp
KSLFFSFQNPDEKISGKYCECNNYGCDRYDGKLCGGPGRGECDCGECKCT
EAFLGDNCGEVNCTLGEKNCIGPDGLKCSGKGQCACDTCDCERGYGGKYC
QKCVSCPSKCSNYKDCVQCVAWDEGPFAEDNTCEQRCSQYDIQMVNETRA
DCEYKDDNNCFFHYRFETINDANETILVQKDKRCIIVFTKPTPILAIVLG
IIGGLILLALILLLLWKLLITAYDNYEYQKFLKENQNPNWANTDNPIYKP
SQTNYQNPTYAGKS
Run BLAST on NCBI

transcript from alignment at scaffold_118:122991..127452+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046888 ID=TCONS_00046888|Name=TCONS_00046888|organism=Clytia hemisphaerica|type=transcript|length=4462bp|location=Sequence derived from alignment at scaffold_118:122991..127452+ (Clytia hemisphaerica)
AGAAATCGCTATTTTTCTCGTTTCAGAACCCTGATGAAAAGATTTCTGGC
AAATATTGTGAATGTAACAATTACGGGTGTGATCGTTATGACGGCAAACT
ATGTGGAGGTAAAGATAATGTTGCCATGGTTTTTGCCCCATTTTTTGAAT
TGCAAATTAATAGATATTGCCACTGAGTCCCCCATTTTGGTTATAATCCT
GagtaaaattttgatctttacAATCGcgaagaagagaaaaaaagtggagt
ttgtttatttgttttaaaCAGGACCTGGACGTGGAGAGTGCGACTGTGGT
GAATGCAAGTGTACCGAAGCCTTCTTGGGTGATAATTGTGGCGAAGTTAA
TTGCACGTTGggcgaaaaaaattgtattggtCCAGATGGGGTAAGAGAGC
ATTATAATCTCTAGCTTTTTCCCTGCACAATCTTTTATGAAACTAGTATA
TATGTTAATTGCAAGGTATATCTTCTGAGTAAGACACCTTGCTACTAGTA
TCTATTCTAAAATGTATTGATCTTAGAATCTGTTTTGGACAAAATTATTT
CCTATTTTAGATGGTGAAACATGTAGGCCTTCGACcagcaaaatatttta
tgttcaaCTTCAGTGCTTCGCCCAACTCGAGGCAATATGGGGTACTCTTC
ATTATTGCCTCAGTTGATACCTGAAAACATGGACTAATTATTTCTTATTT
CATCTAATTAATCCCATTCGTTTGCATTTATTCAGTTGAAATGCAGTGGT
AAAGGACAGTGCGCGTGCGATACGTGTGATTGCGAACGAGGTTATGGTGG
TAAATATTGCCAAAAATGTGTGGTAAGGATTTCAACATATTTGCTTGTTG
TTATTCCCTTTTAGCAGCCTGATAAGAAAGTCAAGTATTTCAAAGGAATT
TACAGAGTTTCggtaattttccttttttgattaGTGGGTATCTTAAAATG
ACGAATTGTGTCTACGATAATGAAGCTTGTCCAATTATATCtcagtcaaa
aattttgttttatcatatttttagtCTTGTCCAAGTAAATGTTCCAACTA
CAAAGATTGCGTTCAATGTGTTGCTTGGGACGAAGGACCATTCGCCGAAG
ACAACACGTGTGAACAGAGATGTTCGCAATACGATATTCAAATGGTGAAC
GAAACCAGAGCTGACTGCGAATACAAAGACGACAATAACTGTTTCTTCCA
CTATCGCTTTGAAACAATCAATGACGCCAACGAAACCATTTTAGTCCAAA
AAGATAAACGTGAGTGTAAATTGTCGTATATTCCGTGTATTTTAATTTGG
ATAATTCTTAAcagcttcaaaaatttattttatttctgctatcgaaaata
atgaaataaaatgcTTCTTAAAAGACATTATCCAGATGATAGTGGTCGGT
AGCTTGTAGGGAATGCAAATGTTGTTTTTCCTTTAATCAAGAGAAAACTT
AGCTTAGTACTCACTTGTTGAAAAAGTGGCGTTTAAATGATAAACGCAGG
CGTTTAACTTTTCAGATCATCTATGTACTCACTAGGAGCTCTTTAGCAAA
GAGAAATAGTAAAAGAGGGGAAAAGTGAAACGAAATCGAAAGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGaaacg
aaatcgaaagtaaaaaccaaaaattacaaaagaattaaaaagatTTAATC
TTGTTTACATTGCGGTGCCTTTGAACTTTAAACgcacatatcaaaatttt
ttgatatgcgcgtttaaatattttttttctaagttcGATAAACGCCGGCG
TTTAACATTAAACGCGGGCGTATAAATTAAACGCCGGCGTTTATTGAGTG
TACTCACTAGAGATCTCATGGTTTTAGACGCGCGCGTATAAAGTTATACA
CCGGCGTTTAGTGTTAAACGCCACTTTTTCAacaagtgagtaccaagctt
aaTGAGTGTGTAATTTGGAAAATGGAAACGATATTTTTTTCATAGGAGTA
AACTTTATATTTTAGGCTGTATCATTGTGTTCACAAAGCCAACGCCCATC
CTCGCCATTGTCCTTGGTATCATCGGAGGTCTCATTTTATTGGCTCTCAT
CTTGTTGTTGCTATGGAAACTCTTGATCACAGCTTACGTAAGTGCCAATT
ACTCCAACCTTGTCCTGTTTTGTCTATGTTGCTATTTTTCTAGAGGAGGG
ATATCAACTAAAATGTTTGAattgatttcttatttttgtgaatttcatta
catattttgatatttcccAAATCCTTTCCTTCTCTTCAGGATAACTACGA
ATATCAGAAATTcttgaaagaaaatcaaaatccaaACTGGGCAAATGTAA
GTTTTTTGTTCTGCACGATTATTTACTTATAAAGATGATATCAGTCCTGC
CTCTTTCTAGAGTAGAAATAACAATTGTCCATCTGAACTAACTAAATAAA
TCGAGTTGCtacttgtaatttttttcttccaaaccCATTTTataatgaaa
tgtttgatgagCGATCTGCTTTCTATTGACACGAAAATGATACCCATTTT
TGATAAATTCCAATTCCTAATCGACGATTTTTTTCTACCTTATATGACTT
TGTGTTAACTTCTCTGTTGAATTCCTTACTGCTTCCCTTGCACGCTCTGA
CCTGCAAATCATTTCTGTTCGGTCAATATTTCAATCGTTTACATAAGGAT
TATATATAATATGACGATTGATCATAGTGTGGATCAATGTTTGCCTGTCA
AGAAATTTCCTTGCTCATTTCAATTCTCACGCGAGACTTTCGTTTGTGAC
CTCCATGAATATTTTGTTTATAGACTGACAATCCGATTTACAAACCATCC
CAGACTAACTATCAAAACCCTACATACGCTGGTAAATCATAGTGGTTTCG
CTTTACTAATCATCTATCATGACTTGAAACAGATCTTTCAAGTTTTTAAA
CAGCCCGAGAACCTTCAACATTCACTCGTAATCTTTACTTCTTCGAAATC
TTTTCGATGAGAAAAGTAGATGAGAGCTTTCCGAATCGATGTATCAAAAA
TGATACTGTGTCAGTCAAGGTTACGAAAGAATGAGAATGACGTTGGAAAA
TATGTACTATagacttgtttttatttttaacacCGATTTTATATATAACT
TAAGTAGAAATATTTGACCCTTATATGTTGCTTAAGATACGTTATACCTT
TGCATGCTCCGTTTCACAAAATGCTGATTTCTtatgattttctaatttta
tttttgatgtaaATTATACTTCAATTGATTAAAAATACTGTTTATTGTTA
CTATTATTAAGGTGCTTTTTATATGCTtcgtatttttttcattattaata
ttatattataacacccccttctcacagacccactgggacccgttcccact
gaaaaattggccaaaatatcgtccccggtgaaaattattcttcaattttt
gtcccttttgaaaataatcaaataaaccaatcctcactgcaaaatattat
gttattttttccatccccactgaattatctgacttaaaaacaaaagaatt
gacatCCCCAGCAATAAAacatatgggaatatcaatctccatcgaatttc
agtccgttattttatccccactggctgaaaaaatcctaccgagtCTGTGA
GAAGACGGTGTATtataattttggattttcttatttggtaaAAAGTGCTT
CAAAATACTGTTCAAACTTGTAGGTATTGTAGAATCATATTTAGGTTAGG
ATCTATCCAGAGGATTTTCTTAAGTAGTGTTCTGAACAGGGCTCGCCTtc
gttttaaagattttttaacatTATCCTAACATCGACACTGCgtatttatt
tcttattttgtcTGTATTTATACTTTACGCTATTTCCCTGTTTATCATTC
TAACCAAACACACGCTCTAACCTCAATTTCCATATAACAAAACTCTAAAC
AACTTTGGAAAACTTTAAGACTGTCGTTTGTATATAAATCGTGACAGTTA
GTAACATTGCATTCATGATAAGAGGTGAATTAAATATTTGTCAATGGTGA
TTCGTTGTGAGCACTGCTGTTCGACATCTGTTCGTCATAATGATTTCATT
AATGACTAGCGATAAGTGCACAAAAGATCTagacaaaatttatttttttc
ttaaaaatcattATTGCCTATAAATTTGAATATGTATAAGTTGATctatt
ttttaaaatatgctTTTTAGAAATTCTAACCTTTACATTACTGTGTCATT
TTCTTGGCTTTTCATCAAATAGATAATAAGTTCTAAGATTTCGAGAATAA
ACTGTTCAAAAAGTTTCGTCACAACTTTATGACTATAAATTGTAAGAATC
ATGACGATTCAACCGCAGACAGTCACTTTTTTCGTCATCTAGAGCTAGAT
CTGATTTATCATACCATAGGTCAGAAGATTACTAAtcatttgcaaaatta
aattgaCTGTGC

Coding sequence (CDS) from alignment at scaffold_118:122991..127452+

>TCONS_00046888 ID=TCONS_00046888|Name=TCONS_00046888|organism=Clytia hemisphaerica|type=CDS|length=5565bp|location=Sequence derived from alignment at scaffold_118:122991..127452+ (Clytia hemisphaerica)
AAATCGCTATTTTTCTCGTTTCAGAACCCTGATGAAAAGATTTCTGGCAA
ATATTGTGAATGTAACAATTACGGGTGTGATCGTTATGACGGCAAACTAT
GTGGAGGACCTGGACGTGGAGAGTGCGACTGTGGTGAATGCAAGTGTACC
GAAGCCTTCTTGGGTGATAATTGTGGCGAAGTTAATTGCACGTTGggcga
aaaaaattgtattggtCCAGATGGGTTGAAATGCAGTGGTAAAGGACAGT
GCGCGTGCGATACGTGTGATTGCGAACGAGGTTATGGTGGTAAATATTGC
CAAAAATGTGTGtCTTGTCCAAGTAAATGTTCCAACTACAAAGATTGCGT
TCAATGTGTTGCTTGGGACGAAGGACCATTCGCCGAAGACAACACGTGTG
AACAGAGATGTTCGCAATACGATATTCAAATGGTGAACGAAACCAGAGCT
GACTGCGAATACAAAGACGACAATAACTGTTTCTTCCACTATCGCTTTGA
AACAATCAATGACGCCAACGAAACCATTTTAGTCCAAAAAGATAAACGCT
GTATCATTGTGTTCACAAAGCCAACGCCCATCCTCGCCATTGTCCTTGGT
ATCATCGGAGGTCTCATTTTATTGGCTCTCATCTTGTTGTTGCTATGGAA
ACTCTTGATCACAGCTTACGATAACTACGAATATCAGAAATTcttgaaag
aaaatcaaaatccaaACTGGGCAAATACTGACAATCCGATTTACAAACCA
TCCCAGACTAACTATCAAAACCCTACATACGCTGGTAAATCATAGAAATC
GCTATTTTTCTCGTTTCAGAACCCTGATGAAAAGATTTCTGGCAAATATT
GTGAATGTAACAATTACGGGTGTGATCGTTATGACGGCAAACTATGTGGA
GGACCTGGACGTGGAGAGTGCGACTGTGGTGAATGCAAGTGTACCGAAGC
CTTCTTGGGTGATAATTGTGGCGAAGTTAATTGCACGTTGggcgaaaaaa
attgtattggtCCAGATGGGTTGAAATGCAGTGGTAAAGGACAGTGCGCG
TGCGATACGTGTGATTGCGAACGAGGTTATGGTGGTAAATATTGCCAAAA
ATGTGTGtCTTGTCCAAGTAAATGTTCCAACTACAAAGATTGCGTTCAAT
GTGTTGCTTGGGACGAAGGACCATTCGCCGAAGACAACACGTGTGAACAG
AGATGTTCGCAATACGATATTCAAATGGTGAACGAAACCAGAGCTGACTG
CGAATACAAAGACGACAATAACTGTTTCTTCCACTATCGCTTTGAAACAA
TCAATGACGCCAACGAAACCATTTTAGTCCAAAAAGATAAACGCTGTATC
ATTGTGTTCACAAAGCCAACGCCCATCCTCGCCATTGTCCTTGGTATCAT
CGGAGGTCTCATTTTATTGGCTCTCATCTTGTTGTTGCTATGGAAACTCT
TGATCACAGCTTACGATAACTACGAATATCAGAAATTcttgaaagaaaat
caaaatccaaACTGGGCAAATACTGACAATCCGATTTACAAACCATCCCA
GACTAACTATCAAAACCCTACATACGCTGGTAAATCATAGAAATCGCTAT
TTTTCTCGTTTCAGAACCCTGATGAAAAGATTTCTGGCAAATATTGTGAA
TGTAACAATTACGGGTGTGATCGTTATGACGGCAAACTATGTGGAGGACC
TGGACGTGGAGAGTGCGACTGTGGTGAATGCAAGTGTACCGAAGCCTTCT
TGGGTGATAATTGTGGCGAAGTTAATTGCACGTTGggcgaaaaaaattgt
attggtCCAGATGGGTTGAAATGCAGTGGTAAAGGACAGTGCGCGTGCGA
TACGTGTGATTGCGAACGAGGTTATGGTGGTAAATATTGCCAAAAATGTG
TGtCTTGTCCAAGTAAATGTTCCAACTACAAAGATTGCGTTCAATGTGTT
GCTTGGGACGAAGGACCATTCGCCGAAGACAACACGTGTGAACAGAGATG
TTCGCAATACGATATTCAAATGGTGAACGAAACCAGAGCTGACTGCGAAT
ACAAAGACGACAATAACTGTTTCTTCCACTATCGCTTTGAAACAATCAAT
GACGCCAACGAAACCATTTTAGTCCAAAAAGATAAACGCTGTATCATTGT
GTTCACAAAGCCAACGCCCATCCTCGCCATTGTCCTTGGTATCATCGGAG
GTCTCATTTTATTGGCTCTCATCTTGTTGTTGCTATGGAAACTCTTGATC
ACAGCTTACGATAACTACGAATATCAGAAATTcttgaaagaaaatcaaaa
tccaaACTGGGCAAATACTGACAATCCGATTTACAAACCATCCCAGACTA
ACTATCAAAACCCTACATACGCTGGTAAATCATAGAAATCGCTATTTTTC
TCGTTTCAGAACCCTGATGAAAAGATTTCTGGCAAATATTGTGAATGTAA
CAATTACGGGTGTGATCGTTATGACGGCAAACTATGTGGAGGACCTGGAC
GTGGAGAGTGCGACTGTGGTGAATGCAAGTGTACCGAAGCCTTCTTGGGT
GATAATTGTGGCGAAGTTAATTGCACGTTGggcgaaaaaaattgtattgg
tCCAGATGGGTTGAAATGCAGTGGTAAAGGACAGTGCGCGTGCGATACGT
GTGATTGCGAACGAGGTTATGGTGGTAAATATTGCCAAAAATGTGTGtCT
TGTCCAAGTAAATGTTCCAACTACAAAGATTGCGTTCAATGTGTTGCTTG
GGACGAAGGACCATTCGCCGAAGACAACACGTGTGAACAGAGATGTTCGC
AATACGATATTCAAATGGTGAACGAAACCAGAGCTGACTGCGAATACAAA
GACGACAATAACTGTTTCTTCCACTATCGCTTTGAAACAATCAATGACGC
CAACGAAACCATTTTAGTCCAAAAAGATAAACGCTGTATCATTGTGTTCA
CAAAGCCAACGCCCATCCTCGCCATTGTCCTTGGTATCATCGGAGGTCTC
ATTTTATTGGCTCTCATCTTGTTGTTGCTATGGAAACTCTTGATCACAGC
TTACGATAACTACGAATATCAGAAATTcttgaaagaaaatcaaaatccaa
ACTGGGCAAATACTGACAATCCGATTTACAAACCATCCCAGACTAACTAT
CAAAACCCTACATACGCTGGTAAATCATAGAAATCGCTATTTTTCTCGTT
TCAGAACCCTGATGAAAAGATTTCTGGCAAATATTGTGAATGTAACAATT
ACGGGTGTGATCGTTATGACGGCAAACTATGTGGAGGACCTGGACGTGGA
GAGTGCGACTGTGGTGAATGCAAGTGTACCGAAGCCTTCTTGGGTGATAA
TTGTGGCGAAGTTAATTGCACGTTGggcgaaaaaaattgtattggtCCAG
ATGGGTTGAAATGCAGTGGTAAAGGACAGTGCGCGTGCGATACGTGTGAT
TGCGAACGAGGTTATGGTGGTAAATATTGCCAAAAATGTGTGtCTTGTCC
AAGTAAATGTTCCAACTACAAAGATTGCGTTCAATGTGTTGCTTGGGACG
AAGGACCATTCGCCGAAGACAACACGTGTGAACAGAGATGTTCGCAATAC
GATATTCAAATGGTGAACGAAACCAGAGCTGACTGCGAATACAAAGACGA
CAATAACTGTTTCTTCCACTATCGCTTTGAAACAATCAATGACGCCAACG
AAACCATTTTAGTCCAAAAAGATAAACGCTGTATCATTGTGTTCACAAAG
CCAACGCCCATCCTCGCCATTGTCCTTGGTATCATCGGAGGTCTCATTTT
ATTGGCTCTCATCTTGTTGTTGCTATGGAAACTCTTGATCACAGCTTACG
ATAACTACGAATATCAGAAATTcttgaaagaaaatcaaaatccaaACTGG
GCAAATACTGACAATCCGATTTACAAACCATCCCAGACTAACTATCAAAA
CCCTACATACGCTGGTAAATCATAGAAATCGCTATTTTTCTCGTTTCAGA
ACCCTGATGAAAAGATTTCTGGCAAATATTGTGAATGTAACAATTACGGG
TGTGATCGTTATGACGGCAAACTATGTGGAGGACCTGGACGTGGAGAGTG
CGACTGTGGTGAATGCAAGTGTACCGAAGCCTTCTTGGGTGATAATTGTG
GCGAAGTTAATTGCACGTTGggcgaaaaaaattgtattggtCCAGATGGG
TTGAAATGCAGTGGTAAAGGACAGTGCGCGTGCGATACGTGTGATTGCGA
ACGAGGTTATGGTGGTAAATATTGCCAAAAATGTGTGtCTTGTCCAAGTA
AATGTTCCAACTACAAAGATTGCGTTCAATGTGTTGCTTGGGACGAAGGA
CCATTCGCCGAAGACAACACGTGTGAACAGAGATGTTCGCAATACGATAT
TCAAATGGTGAACGAAACCAGAGCTGACTGCGAATACAAAGACGACAATA
ACTGTTTCTTCCACTATCGCTTTGAAACAATCAATGACGCCAACGAAACC
ATTTTAGTCCAAAAAGATAAACGCTGTATCATTGTGTTCACAAAGCCAAC
GCCCATCCTCGCCATTGTCCTTGGTATCATCGGAGGTCTCATTTTATTGG
CTCTCATCTTGTTGTTGCTATGGAAACTCTTGATCACAGCTTACGATAAC
TACGAATATCAGAAATTcttgaaagaaaatcaaaatccaaACTGGGCAAA
TACTGACAATCCGATTTACAAACCATCCCAGACTAACTATCAAAACCCTA
CATACGCTGGTAAATCATAGAAATCGCTATTTTTCTCGTTTCAGAACCCT
GATGAAAAGATTTCTGGCAAATATTGTGAATGTAACAATTACGGGTGTGA
TCGTTATGACGGCAAACTATGTGGAGGACCTGGACGTGGAGAGTGCGACT
GTGGTGAATGCAAGTGTACCGAAGCCTTCTTGGGTGATAATTGTGGCGAA
GTTAATTGCACGTTGggcgaaaaaaattgtattggtCCAGATGGGTTGAA
ATGCAGTGGTAAAGGACAGTGCGCGTGCGATACGTGTGATTGCGAACGAG
GTTATGGTGGTAAATATTGCCAAAAATGTGTGtCTTGTCCAAGTAAATGT
TCCAACTACAAAGATTGCGTTCAATGTGTTGCTTGGGACGAAGGACCATT
CGCCGAAGACAACACGTGTGAACAGAGATGTTCGCAATACGATATTCAAA
TGGTGAACGAAACCAGAGCTGACTGCGAATACAAAGACGACAATAACTGT
TTCTTCCACTATCGCTTTGAAACAATCAATGACGCCAACGAAACCATTTT
AGTCCAAAAAGATAAACGCTGTATCATTGTGTTCACAAAGCCAACGCCCA
TCCTCGCCATTGTCCTTGGTATCATCGGAGGTCTCATTTTATTGGCTCTC
ATCTTGTTGTTGCTATGGAAACTCTTGATCACAGCTTACGATAACTACGA
ATATCAGAAATTcttgaaagaaaatcaaaatccaaACTGGGCAAATACTG
ACAATCCGATTTACAAACCATCCCAGACTAACTATCAAAACCCTACATAC
GCTGGTAAATCATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029917XLOC_029917Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046888-proteinTCONS_00046888-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046888-exon-scaffold_118-1491911889:122991..123098TCONS_00046888-exon-scaffold_118-1491911889:122991..123098Clytia hemisphaericaexon
TCONS_00046888-exon-scaffold_118-1510915933:122991..123098TCONS_00046888-exon-scaffold_118-1510915933:122991..123098Clytia hemisphaericaexon
TCONS_00046888-exon-scaffold_118-1575043694:122991..123098TCONS_00046888-exon-scaffold_118-1575043694:122991..123098Clytia hemisphaericaexon
TCONS_00046888-exon-scaffold_118-1491911889:123262..123380TCONS_00046888-exon-scaffold_118-1491911889:123262..123380Clytia hemisphaericaexon
TCONS_00046888-exon-scaffold_118-1510915933:123262..123380TCONS_00046888-exon-scaffold_118-1510915933:123262..123380Clytia hemisphaericaexon
TCONS_00046888-exon-scaffold_118-1575043694:123262..123380TCONS_00046888-exon-scaffold_118-1575043694:123262..123380Clytia hemisphaericaexon
TCONS_00046888-exon-scaffold_118-1491911889:123726..123812TCONS_00046888-exon-scaffold_118-1491911889:123726..123812Clytia hemisphaericaexon
TCONS_00046888-exon-scaffold_118-1510915933:123726..123812TCONS_00046888-exon-scaffold_118-1510915933:123726..123812Clytia hemisphaericaexon
TCONS_00046888-exon-scaffold_118-1575043694:123726..123812TCONS_00046888-exon-scaffold_118-1575043694:123726..123812Clytia hemisphaericaexon
TCONS_00046888-exon-scaffold_118-1491911889:124015..124249TCONS_00046888-exon-scaffold_118-1491911889:124015..124249Clytia hemisphaericaexon
TCONS_00046888-exon-scaffold_118-1510915933:124015..124249TCONS_00046888-exon-scaffold_118-1510915933:124015..124249Clytia hemisphaericaexon
TCONS_00046888-exon-scaffold_118-1575043694:124015..124249TCONS_00046888-exon-scaffold_118-1575043694:124015..124249Clytia hemisphaericaexon
TCONS_00046888-exon-scaffold_118-1491911889:125006..125127TCONS_00046888-exon-scaffold_118-1491911889:125006..125127Clytia hemisphaericaexon
TCONS_00046888-exon-scaffold_118-1510915933:125006..125127TCONS_00046888-exon-scaffold_118-1510915933:125006..125127Clytia hemisphaericaexon
TCONS_00046888-exon-scaffold_118-1575043694:125006..125127TCONS_00046888-exon-scaffold_118-1575043694:125006..125127Clytia hemisphaericaexon
TCONS_00046888-exon-scaffold_118-1491911889:125280..125336TCONS_00046888-exon-scaffold_118-1491911889:125280..125336Clytia hemisphaericaexon
TCONS_00046888-exon-scaffold_118-1510915933:125280..125336TCONS_00046888-exon-scaffold_118-1510915933:125280..125336Clytia hemisphaericaexon
TCONS_00046888-exon-scaffold_118-1575043694:125280..125336TCONS_00046888-exon-scaffold_118-1575043694:125280..125336Clytia hemisphaericaexon
TCONS_00046888-exon-scaffold_118-1491911889:125814..127452TCONS_00046888-exon-scaffold_118-1491911889:125814..127452Clytia hemisphaericaexon
TCONS_00046888-exon-scaffold_118-1510915933:125814..127452TCONS_00046888-exon-scaffold_118-1510915933:125814..127452Clytia hemisphaericaexon
TCONS_00046888-exon-scaffold_118-1575043694:125814..127452TCONS_00046888-exon-scaffold_118-1575043694:125814..127452Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_118supercontigscaffold_118:122991..127452 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
36.6868	33.5249	89.8758	98.5113	133.533	101.55	117.433	124.927	70.1688	87.3535	59.8869	48.8838	60.2541	55.3485	46.1174	54.0513	78.1544	88.4019	47.8228	64.221	71.3658	77.965	61.5683	65.6718	67.789	77.8477	308.139	305.602	308.251	337.896
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR015812Integrin_bsu
IPR012896Integrin_bsu_tail
IPR014836Integrin_bsu_cyt_dom
Blast
[Close]
BLAST of TCONS_00046888 vs. Swiss-Prot (Human)
Match: ITB2 (Integrin beta-2 OS=Homo sapiens GN=ITGB2 PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 2.128e-33
Identity = 83/253 (32.81%), Postives = 133/253 (52.57%), Query Frame = 3 
Query:   30 PDEKISGKYCECNNYGCDRYDGKLCGGPGRGECDCGECKCTEAFLGDNCGEVNCTLGEKNCIGPDGLKCSGKGQCACDTCDCERGYGGKYCQKCVSCPSKCSNYKDCVQCVAWDEGPFAEDNTCEQRCSQYDIQMVNETRADCEYKDDNNCFFHYRFETINDANE-TILVQKDKRCIIVFTKPTPXXXXXXXXXXXXXXXXXXXXXXXXXXXTAYDNYEYQKFLKENQNPNWANTDNPIYKPSQTNYQNPTYA 785
            P + I G+YCEC+   C+RY+G++CGGPGRG C CG+C+C   F G  C    C    + C+ P  ++CSG+G+C C+ C+C  GY    CQ+C  CPS C  Y  C +C+ +++GPF ++  C   C    +         C+ +D   C+  Y  E  +  +   I V + + C+     P     +   + G +++  L+L++   L+  + D  EY++F KE     W N DNP++K + T   NP +A
Sbjct:  525 PGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSAC---QCERTTEGCLNPRRVECSGRGRCRCNVCECHSGYQLPLCQECPGCPSPCGKYISCAECLKFEKGPFGKN--CSAACPGLQLSNNPVKGRTCKERDSEGCWVAYTLEQQDGMDRYLIYVDESRECV---AGPNIAAIVGGTVAGIVLIGILLLVIWKALIHLS-DLREYRRFEKEKLKSQW-NNDNPLFKSATTTVMNPKFA 767
The following BLAST results are available for this feature:
BLAST of TCONS_00046888 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ITB22.128e-3332.81Integrin beta-2 OS=Homo sapiens GN=ITGB2 PE=1 SV=2[more]
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