TCONS_00046891-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00046891-protein
Unique NameTCONS_00046891-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length627

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00046891-protein ID=TCONS_00046891-protein|Name=TCONS_00046891-protein|organism=Clytia hemisphaerica|type=polypeptide|length=627bp
MKIDIIWLTLLLVNIFSIIHSDDNVCTPNTDCGSCLRSSGSCSWCKDENF
TSTVQQPRCDLPSNLKDCKDIMNVQGEVKVVANDATLQVRPKEVKLKLRP
GAPKTFSIKVTPAKNFPVNLYYLMDMSKSMEDDLEKLQSLGTKIAAEIGT
ITTKYKLGFGSFVDKTVAPFIQVNKKDRPCTRANDKNGNFQGFCVPTFGY
RHVFNFSKDAQAFEAAVKKQIISGNLDTPEGGMDGLMQVATCEKILQWPE
KDRARRLVVFVTDALPHISGDGKLGGIVIPNDGECHLDAQGRYTESNTMD
YPSLSQVRAKLKENKIIPIFAVTGDVVDTYNKISNQWKDIGSSIGELSGN
SDNIVNLIRDSYKAILQTVRLSNDPVDNIRVEYKPKVCDSPDGDDTCTDV
KIEQEVEFSVTLTATQCPIDLSKKGDRTFNINIPGFGEVKVDVELICQCP
CETLPNMREEDSVKCNGTGTFQCGICYCPEGRYGEQCQCDGFTKLSDKEC
KPNNTTETVCSGMGNCVCGKCVCHRQDLPTNIVSGKYCQCTNFGCDYHKG
EVCGGADRGICVCNKCVCNEPFIGQNCGEVNCTIADKQCSDKNGVECSGK
GECNCGICNCNGGYEGKHCEKXLSDPM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029918XLOC_029918Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00046891TCONS_00046891Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015812Integrin_bsu
IPR002369Integrin_bsu_VWA
IPR033760Integrin_beta_N
IPR002035VWF_A
IPR032695Integrin_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015812Integrin beta subunitPRINTSPR01186INTEGRINBcoord: 510..523
score: 68.52
coord: 29..45
score: 38.34
coord: 338..362
score: 42.07
coord: 88..101
score: 49.74
coord: 300..323
score: 57.25
coord: 227..249
score: 47.5
coord: 156..175
score: 54.07
coord: 116..134
score: 69.98
IPR015812Integrin beta subunitPROSITEPS00243INTEGRIN_BETAcoord: 510..523
IPR015812Integrin beta subunitPROSITEPS00243INTEGRIN_BETAcoord: 597..610
IPR002369Integrin beta subunit, VWA domainSMARTSM00187INB_2coord: 31..449
e-value: 2.8E-174
score: 594.9
IPR002369Integrin beta subunit, VWA domainPFAMPF00362Integrin_betacoord: 113..368
e-value: 4.4E-93
score: 311.4
NoneNo IPR availableGENE3D2.60.40.1510coord: 578..620
e-value: 1.2E-6
score: 28.4
coord: 536..577
e-value: 0.0052
score: 16.6
NoneNo IPR availableGENE3D2.60.40.1510coord: 77..223
e-value: 4.5E-28
score: 97.8
NoneNo IPR availableGENE3D2.10.25.10coord: 449..490
e-value: 3.0E-6
score: 26.9
coord: 496..535
e-value: 4.4E-7
score: 29.6
NoneNo IPR availableGENE3D2.60.40.1510coord: 305..448
e-value: 2.2E-32
score: 111.6
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 586..621
NoneNo IPR availableSUPERFAMILY103575Plexin repeatcoord: 23..67
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 539..578
IPR033760Integrin beta N-terminalPFAMPF17205PSI_integrincoord: 24..67
e-value: 1.1E-9
score: 37.8
IPR002035von Willebrand factor, type ASUPERFAMILY53300vWA-likecoord: 113..366
IPR032695Integrin domainSUPERFAMILY69179Integrin domainscoord: 377..452

Blast
[Close]
BLAST of TCONS_00046891-protein vs. Swiss-Prot (Human)
Match: ITB1 (Integrin beta-1 OS=Homo sapiens GN=ITGB1 PE=1 SV=2)

HSP 1 Score: 415.231 bits (1066), Expect = 1.851e-135
Identity = 247/655 (37.71%), Postives = 365/655 (55.73%), Query Frame = 0 
Query:    5 IIWLTLLLVNIFSIIHSDDNVCTPNT--DCGSCLRSSGSCSWCKDENFTS--TVQQPRCD----------------LPSNLKDCKDIMNV----QGEVKVVANDATLQVRPKEVKLKLRPGAPKTFSIKVTPAKNFPVNLYYLMDMSKSMEDDLEKLQSLGTKIAAEIGTITTKYKLGFGSFVDKTVAPFIQVN--KKDRPCTRANDKNGNFQGFCVPTFGYRHVFNFSKDAQAFEAAVKKQIISGNLDTPEGGMDGLMQVATCEKILQWPEKDRARRLVVFVTDALPHISGDGKLGGIVIPNDGECHLDAQGRYTESNTMDYPSLSQVRAKLKENKIIPIFAVTGDVVDTYNKISNQWKDIGSSIGELSGNSDNIVNLIRDSYKAILQTVRLSNDPV-DNIRVEYKPKVCDSPDGD----DTCTDVKIEQEVEFSVTLTATQCPIDLSKKGDRTFNINIPGFG-EVKVDVELICQCPC--ETLPNMREEDSVKCN-GTGTFQCGICYCPEGRYGEQCQC---DGFTKLSDKECKPNNTTETVCSGMGNCVCGKCVCHRQDLPTNIVSGKYCQCTNFGCDYHKGEVCGGADRGICVCNKCVCNEPFIGQNCGEVNCTIADKQCSDKNGVECSGKGECNCGICNC-NGGYEGKHCE 620
            I W+ L+         +D+N C       CG C+++  +C WC +  F         RCD                 P   KD K   NV    +G  + +  +   Q++P+++ L+LR G P+TF++K   A+++P++LYYLMD+S SM+DDLE ++SLGT +  E+  IT+ +++GFGSFV+KTV P+I     K   PCT   +        C   F Y++V + +   + F   V KQ ISGNLD+PEGG D +MQVA C  ++ W       RL+VF TDA  H +GDGKLGGIV+PNDG+CHL+    YT S+  DYPS++ +  KL EN I  IFAVT +    Y ++ N      S++G LS NS N++ LI D+Y ++   V L N  + + + + YK    +  +G       C+++ I  EV+F +++T+ +CP    KK   +F I   GF  EV+V ++ IC+C C  E +P     +S KC+ G GTF+CG C C EGR G  C+C   +  ++  D  C+  N++E +CS  G CVCG+CVC ++D    I SGK+C+C NF CD   G +CGG   G+C C  C CN  + G  C   +C++    C   NG  C+G+G C CG+C C +  ++G+ CE
Sbjct:    6 IFWIGLISSVCCVFAQTDENRCLKANAKSCGECIQAGPNCGWCTNSTFLQEGMPTSARCDDLEALKKKGCPPDDIENPRGSKDIKKNKNVTNRSKGTAEKLKPEDITQIQPQQLVLRLRSGEPQTFTLKFKRAEDYPIDLYYLMDLSYSMKDDLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTVMPYISTTPAKLRNPCTSEQN--------CTSPFSYKNVLSLTNKGEVFNELVGKQRISGNLDSPEGGFDAIMQVAVCGSLIGW---RNVTRLLVFSTDAGFHFAGDGKLGGIVLPNDGQCHLE-NNMYTMSHYYDYPSIAHLVQKLSENNIQTIFAVTEEFQPVYKELKNLIPK--SAVGTLSANSSNVIQLIIDAYNSLSSEVILENGKLSEGVTISYKSYCKNGVNGTGENGRKCSNISIGDEVQFEISITSNKCP----KKDSDSFKIRPLGFTEEVEVILQYICECECQSEGIP-----ESPKCHEGNGTFECGACRCNEGRVGRHCECSTDEVNSEDMDAYCRKENSSE-ICSNNGECVCGQCVCRKRDNTNEIYSGKFCECDNFNCDRSNGLICGG--NGVCKCRVCECNPNYTGSAC---DCSLDTSTCEASNGQICNGRGICECGVCKCTDPKFQGQTCE 631
The following BLAST results are available for this feature:
BLAST of TCONS_00046891-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ITB11.851e-13537.71Integrin beta-1 OS=Homo sapiens GN=ITGB1 PE=1 SV=2[more]
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