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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046891 ID=TCONS_00046891|Name=TCONS_00046891|organism=Clytia hemisphaerica|type=transcript|length=2202bpRun BLAST on NCBI protein sequence of TCONS_00046891-protein >TCONS_00046891-protein ID=TCONS_00046891-protein|Name=TCONS_00046891-protein|organism=Clytia hemisphaerica|type=polypeptide|length=627bp MKIDIIWLTLLLVNIFSIIHSDDNVCTPNTDCGSCLRSSGSCSWCKDENFRun BLAST on NCBI transcript from alignment at scaffold_118:134002..144113+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046891 ID=TCONS_00046891|Name=TCONS_00046891|organism=Clytia hemisphaerica|type=transcript|length=10112bp|location=Sequence derived from alignment at scaffold_118:134002..144113+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_118:134002..144113+ >TCONS_00046891 ID=TCONS_00046891|Name=TCONS_00046891|organism=Clytia hemisphaerica|type=CDS|length=32028bp|location=Sequence derived from alignment at scaffold_118:134002..144113+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00046891 vs. Swiss-Prot (Human)
Match: ITB1 (Integrin beta-1 OS=Homo sapiens GN=ITGB1 PE=1 SV=2) HSP 1 Score: 382.489 bits (981), Expect = 4.988e-120 Identity = 221/555 (39.82%), Postives = 324/555 (58.38%), Query Frame = 1
Query: 322 PSNLKDCKDIMNV----QGEVKVVANDATLQVRPKEVKLKLRPGAPKTFSIKVTPAKNFPVNLYYLMDMSKSMEDDLEKLQSLGTKIAAEIGTITTKYKLGFGSFVDKTVAPFIQVN--KKDRPCTRANDKNGNFQGFCVPTFGYRHVFNFSKDAQAFEAAVKKQIISGNLDTPEGGMDGLMQVATCEKILQWPEKDRARRLVVFVTDALPHISGDGKLGGIVIPNDGECHLDAQGRYTESNTMDYPSLSQVRAKLKENKIIPIFAVTGDVVDTYNKISNQWKDIGSSIGELSGNSDNIVNLIRDSYKAILQTVRLSNDPV-DNIRVEYKPKVCDSPDGDD----TCTDVKIEQEVEFSVTLTATQCPIDLSKKGDRTFNINIPGFG-EVKVDVELICQCPC--ETLPNMREEDSVKCN-GTGTFQCGICYCPEGRYGEQCQC---DGFTKLSDKECKPNNTTETVCSGMGNCVCGKCVCHRQDLPTNIVSGKYCQCTNFGCDYHKGEVCGGADRGICVCNKCVCNEPFIGQNCGEVNCTIADKQCSDKNGVECS 1932
P KD K NV +G + + + Q++P+++ L+LR G P+TF++K A+++P++LYYLMD+S SM+DDLE ++SLGT + E+ IT+ +++GFGSFV+KTV P+I K PCT + C F Y++V + + + F V KQ ISGNLD+PEGG D +MQVA C ++ W RL+VF TDA H +GDGKLGGIV+PNDG+CHL+ YT S+ DYPS++ + KL EN I IFAVT + Y ++ N S++G LS NS N++ LI D+Y ++ V L N + + + + YK + +G C+++ I EV+F +++T+ +CP KK +F I GF EV+V ++ IC+C C E +P +S KC+ G GTF+CG C C EGR G C+C + ++ D C+ N++E +CS G CVCG+CVC ++D I SGK+C+C NF CD G +CGG G+C C C CN + G C +C++ C NG C+
Sbjct: 83 PRGSKDIKKNKNVTNRSKGTAEKLKPEDITQIQPQQLVLRLRSGEPQTFTLKFKRAEDYPIDLYYLMDLSYSMKDDLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTVMPYISTTPAKLRNPCTSEQN--------CTSPFSYKNVLSLTNKGEVFNELVGKQRISGNLDSPEGGFDAIMQVAVCGSLIGW---RNVTRLLVFSTDAGFHFAGDGKLGGIVLPNDGQCHLE-NNMYTMSHYYDYPSIAHLVQKLSENNIQTIFAVTEEFQPVYKELKNLIPK--SAVGTLSANSSNVIQLIIDAYNSLSSEVILENGKLSEGVTISYKSYCKNGVNGTGENGRKCSNISIGDEVQFEISITSNKCP----KKDSDSFKIRPLGFTEEVEVILQYICECECQSEGIP-----ESPKCHEGNGTFECGACRCNEGRVGRHCECSTDEVNSEDMDAYCRKENSSE-ICSNNGECVCGQCVCRKRDNTNEIYSGKFCECDNFNCDRSNGLICGG--NGVCKCRVCECNPNYTGSAC---DCSLDTSTCEASNGQICN 608 The following BLAST results are available for this feature:
BLAST of TCONS_00046891 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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