TCONS_00046904-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00046904-protein
Unique Name	TCONS_00046904-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	516

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00046904-protein ID=TCONS_00046904-protein|Name=TCONS_00046904-protein|organism=Clytia hemisphaerica|type=polypeptide|length=516bp
MSRLPRDEIFSNFYKWDILQKRSDLFRIYEIEILEKDDSWRNFDEIVGLF
TERSKKFRLPMVLEEGTELWKSDAHFGRQRLRGCNPKSLQLCKEIPENFG
VTGDFVNELLGDEMNLEEALEKNRIFIVNHSIMDEILDNECNQVIPSPMT
LFYLNKEDNLMPIAIQLYQQKGDHNPVFTPNDSHYTWMLVKMWFNNADAT
YQRMLLMTSSHWILECITVSLHRNLSPSHPIHRLLQTYLGLVLTINNFEM
HALLNGHSNSWIDQNMTIKNEGMLKLIERYWKKFDFTKDILENSMEDRQV
LSEEILKEYPYRDDALVLKQNIQDYVSQIVKGYYENEETLVGDIEIQNWA
GEMAQTESCHLKNLPGNGEFAAFEDFIQFLSHVIFKVTVEHAALNLPLYD
ECAFVPNYPMCMRGSPPNSKESLTEADVMAALPSKNTTMEILIINKLLSE
RDSSGLADSRAQFQYDPISLPARERFSGQLRESAAMIDIRNKKERLEKGL
VYDYLNPKGGTDKKSL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_029929	XLOC_029929	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00046904	TCONS_00046904	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013819	LipOase_C

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding
GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.245.10		coord: 19..98 e-value: 5.8E-11 score: 41.2
None	No IPR available	GENE3D	3.10.450.60		coord: 99..198 e-value: 5.3E-32 score: 109.9
None	No IPR available	GENE3D	1.20.245.10		coord: 201..510 e-value: 4.6E-68 score: 229.3
IPR013819	Lipoxygenase, C-terminal	PFAM	PF00305	Lipoxygenase	coord: 51..497 e-value: 3.3E-53 score: 181.1
IPR013819	Lipoxygenase, C-terminal	PROSITE	PS51393	LIPOXYGENASE_3	coord: 1..516 score: 89.669
IPR013819	Lipoxygenase, C-terminal	SUPERFAMILY	48484	Lipoxigenase	coord: 3..508

Blast

[Close]

BLAST of TCONS_00046904-protein vs. Swiss-Prot (Human)
Match: LOX5 (Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALOX5 PE=1 SV=2)

HSP 1 Score: 218.394 bits (555), Expect = 2.255e-63
Identity = 137/477 (28.72%), Postives = 238/477 (49.90%), Query Frame = 0

Query:   39 SWRNFDEIVGLFTERSKKFRLPMVLEEGTELWKSDAHFGRQRLRGCNPKSLQLCKEIPENFGVTGDFVNELLGDEMNLEEALEKNRIFIVNHSIMDEILDNECN----QVIPSPMTLFYLNKEDNLMPIAIQLYQQKGDHNPVFTPNDSHYTWMLVKMWFNNAD-ATYQRMLLMTSSHWILECITVSLHRNLSPSHPIHRLLQTYLGLVLTINNFEMHALLNGHSNSWIDQNMTIKNEGMLKLIERYWKKFDFTKDILENSMEDRQVLSEEILKEYPYRDDALVLKQNIQDYVSQIVKGYYENEETLVGDIEIQNWAGEMAQTESCHLKNLPGNGEFAAFEDFIQFLSHVIFKVTVEHAALNLPLYDECAFVPNYPMCMRGSPPNSKESLTEADVMAALPSKNTTMEILIINKLLSERDSSGL---ADSRAQFQYDPISLPARERFSGQLRESAAMIDIRNKKERLEKGLVYDYLNP 507
            SW +F +   +F + S       + E     W+ D  FG Q L GCNP  ++ C E+PE   VT + V   L  +++LE+ +++  IFIV+  ++D I  N+ +    Q + +P+ L Y N  + ++PIAIQL Q  GD NP+F P+D+ Y W+L K+W  ++D   +Q +  +  +H + E   ++++R L   HPI +LL  ++   + IN      L+        D+       G +++++R  K   +       +++ R + S+E +  Y YRDD L++ + I+ + +++V  YYE ++ +  D E+Q++  ++        K+        + E   ++L+ VIF  + +HAA+N   YD C+++PN P  MR  PP +K  +T   ++  LP +  +   L     LS+   + L         F   P+   A  RF   L    ++I  RNKK    K L Y YL+P
Sbjct:  201 SWNDFADFEKIFVKISN-----TISERVMNHWQEDLMFGYQFLNGCNPVLIRRCTELPEKLPVTTEMVECSLERQLSLEQEVQQGNIFIVDFELLDGIDANKTDPCTLQFLAAPICLLYKNLANKIVPIAIQLNQIPGDENPIFLPSDAKYDWLLAKIWVRSSDFHVHQTITHLLRTHLVSEVFGIAMYRQLPAVHPIFKLLVAHVRFTIAINTKAREQLIC--ECGLFDKANATGGGGHVQMVQRAMKDLTYASLCFPEAIKARGMESKEDIPYYFYRDDGLLVWEAIRTFTAEVVDIYYEGDQVVEEDPELQDFVNDVYVYGMRGRKSSGFPKSVKSREQLSEYLTVVIFTASAQHAAVNFGQYDWCSWIPNAPPTMRAPPPTAKGVVTIEQIVDTLPDRGRSCWHLGAVWALSQFQENELFLGMYPEEHFIEKPVK-EAMARFRKNLEAIVSVIAERNKK----KQLPYYYLSP 665

The following BLAST results are available for this feature:

BLAST of TCONS_00046904-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00046904-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
LOX5	2.255e-63	28.72	Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALO...	[more]

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TCONS_00046904-protein (polypeptide) - C. hemisphaerica