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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046904 ID=TCONS_00046904|Name=TCONS_00046904|organism=Clytia hemisphaerica|type=transcript|length=3150bpRun BLAST on NCBI protein sequence of TCONS_00046904-protein >TCONS_00046904-protein ID=TCONS_00046904-protein|Name=TCONS_00046904-protein|organism=Clytia hemisphaerica|type=polypeptide|length=516bp MSRLPRDEIFSNFYKWDILQKRSDLFRIYEIEILEKDDSWRNFDEIVGLFRun BLAST on NCBI transcript from alignment at scaffold_118:394985..409663+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046904 ID=TCONS_00046904|Name=TCONS_00046904|organism=Clytia hemisphaerica|type=transcript|length=14679bp|location=Sequence derived from alignment at scaffold_118:394985..409663+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_118:394985..409663+ >TCONS_00046904 ID=TCONS_00046904|Name=TCONS_00046904|organism=Clytia hemisphaerica|type=CDS|length=21714bp|location=Sequence derived from alignment at scaffold_118:394985..409663+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00046904 vs. Swiss-Prot (Human)
Match: LOX5 (Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALOX5 PE=1 SV=2) HSP 1 Score: 238.424 bits (607), Expect = 1.109e-66 Identity = 178/675 (26.37%), Postives = 317/675 (46.96%), Query Frame = 1
Query: 571 TGDTKGAGLHNSAHVVLVNEEDVESRQIKLTGCSVTVFKKGRVDKFKVKNLSGFGRVKRIIIEQHKEQNEVEWYIDRISVAQVLENSIDQETIFPVHRWLRINKPLVINEFDTCLPQHDPN---KKQREDEVARKKLIYTYKKQQQDLPPQMSR-----LPRDEIFSNFYKWDILQKRS----DLFRIYEIEILEKDDSWRNFDEIVGLFTERSKKFRLPMVLEEGTELWKSDAHFGRQRLRGCNPKSLQLCKEIPENFGVTGDFVNELLGDEMNLEEALEKNRIFIVNHSIMDEILDNECN----QVIPSPMTLFYLNKEDNLMPIAIQLYQQKGDHNPVFTPNDSHYTWMLVKMWFNNAD-ATYQRMLLMTSSHWILECITVSLHRNLSPSHPIHRLLQTYLGLVLTINNFEMHALLNGHSNSWIDQNMTIKNEGMLKLIERYWKKFDFTKDILENSMEDRQVLSEEILKEYPYRDDALVLKQNIQDYVSQIVKGYYENEETLVGDIEIQNWAGEMAQTESCHLKNLPGNGEFAAFEDFIQFLSHVIFKVTVEHAALNLPLYDECAFVPNYPMCMRGSPPNSKESLTEADVMAALPSKNTTMEILIINKLLSERDSSGL---ADSRAQFQYDPISLPARERFSGQLRESAAMIDIRNKKERLEKGLVYDYLNP 2535
TG AG + ++ LV + + L F++G VD + V G ++ + IE+ K +WY+ I++ + I+ FP +RW+ + +V+ + L + D K+ R E+ ++ Y + + P + LPRD F + D + S +LF + + + SW +F + +F + S + E W+ D FG Q L GCNP ++ C E+PE VT + V L +++LE+ +++ IFIV+ ++D I N+ + Q + +P+ L Y N + ++PIAIQL Q GD NP+F P+D+ Y W+L K+W ++D +Q + + +H + E ++++R L HPI +LL ++ + IN L+ D+ G +++++R K + +++ R + S+E + Y YRDD L++ + I+ + +++V YYE ++ + D E+Q++ ++ K+ + E ++L+ VIF + +HAA+N YD C+++PN P MR PP +K +T ++ LP + + L LS+ + L F P+ A RF L ++I RNKK K L Y YL+P
Sbjct: 10 TGSQWFAGTDDYIYLSLVGSAGCSEKHL-LDKPFYNDFERGAVDSYDVTVDEELGEIQLVRIEKRKYWLNDDWYLKYITLKTPHGDYIE----FPCYRWITGDVEVVLRDGRAKLARDDQIHILKQHRRKELETRQKQYRWMEWNPGFPLSIDAKCHKDLPRDIQFDSEKGVDFVLNYSKAMENLFINRFMHMFQS--SWNDFADFEKIFVKISNT-----ISERVMNHWQEDLMFGYQFLNGCNPVLIRRCTELPEKLPVTTEMVECSLERQLSLEQEVQQGNIFIVDFELLDGIDANKTDPCTLQFLAAPICLLYKNLANKIVPIAIQLNQIPGDENPIFLPSDAKYDWLLAKIWVRSSDFHVHQTITHLLRTHLVSEVFGIAMYRQLPAVHPIFKLLVAHVRFTIAINTKAREQLIC--ECGLFDKANATGGGGHVQMVQRAMKDLTYASLCFPEAIKARGMESKEDIPYYFYRDDGLLVWEAIRTFTAEVVDIYYEGDQVVEEDPELQDFVNDVYVYGMRGRKSSGFPKSVKSREQLSEYLTVVIFTASAQHAAVNFGQYDWCSWIPNAPPTMRAPPPTAKGVVTIEQIVDTLPDRGRSCWHLGAVWALSQFQENELFLGMYPEEHFIEKPVK-EAMARFRKNLEAIVSVIAERNKK----KQLPYYYLSP 665 The following BLAST results are available for this feature:
BLAST of TCONS_00046904 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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