TCONS_00047236-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00047236-protein
Unique NameTCONS_00047236-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length824

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00047236-protein ID=TCONS_00047236-protein|Name=TCONS_00047236-protein|organism=Clytia hemisphaerica|type=polypeptide|length=824bp
MAEKKLYREEKLMPPVWDSSHQNYNDWRFCVELWDSACDRAKIAKADRSY
LLFAKLKDIKRDGLGAKLITAAQLGNIDVFGDQGVKQILTVLDERFKEDQ
LALKKKAWHSFINTKRNQEEEVDTYIDKYEENVADLRKLGRDLDDETLAL
QLMENASLSDELSQLVLSGIDEKQANIFDQAKRSMRKYLGSTKTGLSVKG
TSIVKEEAFDTSHVNDEEAMYMYSGSPRGRGRGGGGRGRSYARGRGNHQR
GGNSNFPPRQRSNAQQRARFSSNARARGGVRRRETNPLDDDGYPMTCNIC
GSIFHFSGRNGTGCPESYENQQQVNVAGNENPEVKEANICDIPIKHEEVF
HMRSSEEALLDSCCSANVMGKQWKDIFIDAMSDEDKSEIRHFKGGTVFRF
GGEPPVRSTEKIEFPCYVLGERSTMIADVVDRDIPLLISKPEMKTRGFIL
DFNNETLTANGVCHVLQTTSTGHFKIPLWKDEEVNVCITEMEMNEQRKVL
IKLHRQFRHNSAKATEDLLRNAGLLTNDIRKINKEVVADCDICKQYKKTP
ARPEVALPIAKKFNDVVAMDLKIVKNGELYFIHFSDLFTRFSKSAVWSRK
LPSSVVNAYILTWIESGFGASNKVIVDNGGEFDNPEFLDAMEQYNIEVCA
TGAESPWSNGECERNHAVVDLMVEKMMLEDKSLSVREALAHAVSAKNSLQ
NYNGFAPIQLVTGALPNLPSVLVNGLPALEEAEGDRTKTHLERMYSARRA
FVKAESSEKIKRALRHPVRSCETIFVNGEKVYYKRAADNKWRGPAKVIGH
LSTKVFVVHGSRVLSCSSSRVIPV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030088XLOC_030088Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00047236TCONS_00047236Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR001584Integrase_cat-core
IPR001037Integrase_C_retrovir
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 126..146
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 83..166
e-value: 7.5E-8
score: 32.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 222..288
IPR012337Ribonuclease H-like domainGENE3D3.30.420.10coord: 556..763
e-value: 1.2E-17
score: 63.7
IPR012337Ribonuclease H-like domainSUPERFAMILY53098Ribonuclease H-likecoord: 564..720
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 564..667
e-value: 5.8E-11
score: 42.5
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 549..715
score: 17.186
IPR001037Integrase, C-terminal, retroviralPROSITEPS51027INTEGRASE_DBDcoord: 779..824
score: 9.213

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047236-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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