TCONS_00047237-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00047237-protein
Unique Name	TCONS_00047237-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	421

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00047237-protein ID=TCONS_00047237-protein|Name=TCONS_00047237-protein|organism=Clytia hemisphaerica|type=polypeptide|length=421bp
MSYEVFVNERLKSKSYIHKNEAKKDILNALRAFGDLHPDEDIYVHTDGSR
RDLICLKGTIPVNYKGSTYNIPIQIWLLSSHPFNAPLVFVRPTANMLIKP
NKHVDNSGKVYMPYLSEWRAQKSDTYSMINMLCMIFAEFCPVYSKPAGQR
APPQQPRPSGYPPGYPAPSGGGGPPGYPTHNAGMPQPNYPMQRPPAYQPA
NLPSYTPYPSTSTPYPATSGYPQQQQQHHTTTQAPARPPPPATRQESVIK
DEHLRLSLLSTAEDKLKRRVKEVFQMGQDELQILETKKSDLSKGNQTLQD
MVRRMTDEKGNLDSNVTILEEKNRDLENMLEKLEKDSENMNIDETVITIA
PLYNQILKLFAEENAIEDTMYYLSDALRRGVIESEIFLKTVRDLSRKQFM
LRATLQKARATAGLSGNLLGH

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_030089	XLOC_030089	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00047237	TCONS_00047237	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR016135	UBQ-conjugating_enzyme/RWD
IPR008883	UEV_N
IPR017916	SB_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0006464	cellular protein modification process
GO:0015031	protein transport

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006464	cellular protein modification process
biological_process	GO:0015031	protein transport

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 309..343
None	No IPR available	GENE3D	1.20.5.340		coord: 247..411 e-value: 9.8E-5 score: 21.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 146..248
None	No IPR available	SUPERFAMILY	140111	Endosomal sorting complex assembly domain	coord: 351..411
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	GENE3D	3.10.110.10		coord: 2..144 e-value: 8.3E-22 score: 77.2
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	SUPERFAMILY	54495	UBC-like	coord: 13..146
IPR008883	Ubiquitin E2 variant, N-terminal	PFAM	PF05743	UEV	coord: 23..142 e-value: 1.6E-40 score: 137.6
IPR008883	Ubiquitin E2 variant, N-terminal	PROSITE	PS51322	UEV	coord: 3..146 score: 44.803
IPR017916	Steadiness box (SB) domain	PFAM	PF09454	Vps23_core	coord: 345..407 e-value: 3.2E-26 score: 91.0
IPR017916	Steadiness box (SB) domain	PROSITE	PS51312	SB	coord: 350..418 score: 13.787

Blast

[Close]

BLAST of TCONS_00047237-protein vs. Swiss-Prot (Human)
Match: TS101 (Tumor susceptibility gene 101 protein OS=Homo sapiens GN=TSG101 PE=1 SV=2)

HSP 1 Score: 318.161 bits (814), Expect = 8.568e-106
Identity = 177/403 (43.92%), Postives = 246/403 (61.04%), Query Frame = 0

Query:   16 YIHKNEAKKDILNALRAFGDLHPDEDIYVHTDGSRRDLICLKGTIPVNYKGSTYNIPIQIWLLSSHPFNAPLVFVRPTANMLIKPNKHVDNSGKVYMPYLSEWRAQKSDTYSMINMLCMIFAEFCPVYSKPAGQRAPPQQ---PRPSGYPPGYPAPSGGGGPPGYPTHNAGMPQPNYPMQRPPAYQPANLPSYTPYPSTSTPYPATSGYPQQQQQHHTTTQAPARPPPPATRQESVIKDEHLRLSLLSTAEDKLKRRVKEVFQMGQDELQILETKKSDLSKGNQTLQDMVRRMTDEKGNLDSNVTILEEKNRDLENMLEKLEKDSENMNIDETVITIAPLYNQILKLFAEENAIEDTMYYLSDALRRGVIESEIFLKTVRDLSRKQFMLRATLQKARATAGLS 415
            Y +++   ++ +N +  + DL P  D YV  DGS R+L+ L GTIPV Y+G+TYNIPI +WLL ++P+N P+ FV+PT++M IK  KHVD +GK+Y+PYL EW+  +SD   +I ++ ++F +  PV+S+P     PP Q   P  + Y PG P   GG  P              YP   PP   P+  P     P    P   +S YP Q      TT  P+R        +  I ++ +R SL+S   DKL+ R+KE     Q EL  L+  + DL KG+Q L++MV R+  E   +D N+ +L++K+ +L + LEK+E  SEN +IDE +I  APLY QIL L+AEENAIEDT++YL +ALRRGVI+ ++FLK VR LSRKQF LRA +QKAR TAGLS
Sbjct:   15 YKYRDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPPVFSRPISASYPPYQATGPPNTSYMPGMP---GGISP--------------YPSGYPP--NPSGYPGCPYPPGGPYPATTSSQYPSQPP---VTTVGPSR--------DGTISEDTIRASLISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSALEKMENQSENNDIDEVIIPTAPLYKQILNLYAEENAIEDTIFYLGEALRRGVIDLDVFLKHVRLLSRKQFQLRALMQKARKTAGLS 387

The following BLAST results are available for this feature:

BLAST of TCONS_00047237-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00047237-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TS101	8.568e-106	43.92	Tumor susceptibility gene 101 protein OS=Homo sapi...	[more]

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TCONS_00047237-protein (polypeptide) - C. hemisphaerica