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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047237 ID=TCONS_00047237|Name=TCONS_00047237|organism=Clytia hemisphaerica|type=transcript|length=2347bpRun BLAST on NCBI protein sequence of TCONS_00047237-protein >TCONS_00047237-protein ID=TCONS_00047237-protein|Name=TCONS_00047237-protein|organism=Clytia hemisphaerica|type=polypeptide|length=421bp MSYEVFVNERLKSKSYIHKNEAKKDILNALRAFGDLHPDEDIYVHTDGSRRun BLAST on NCBI transcript from alignment at scaffold_123:363628..370791- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047237 ID=TCONS_00047237|Name=TCONS_00047237|organism=Clytia hemisphaerica|type=transcript|length=7164bp|location=Sequence derived from alignment at scaffold_123:363628..370791- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_123:363628..370791- >TCONS_00047237 ID=TCONS_00047237|Name=TCONS_00047237|organism=Clytia hemisphaerica|type=CDS|length=11394bp|location=Sequence derived from alignment at scaffold_123:363628..370791- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00047237 vs. Swiss-Prot (Human)
Match: TS101 (Tumor susceptibility gene 101 protein OS=Homo sapiens GN=TSG101 PE=1 SV=2) HSP 1 Score: 179.489 bits (454), Expect = 2.837e-49 Identity = 90/170 (52.94%), Postives = 122/170 (71.76%), Query Frame = 2
Query: 1103 ESVIKDEHLRLSLLSTAEDKLKRRVKEVFQMGQDELQILETKKSDLSKGNQTLQDMVRRMTDEKGNLDSNVTILEEKNRDLENMLEKLEKDSENMNIDETVITIAPLYNQILKLFAEENAIEDTMYYLSDALRRGVIESEIFLKTVRDLSRKQFMLRATLQKARATAGLS 1612
+ I ++ +R SL+S DKL+ R+KE Q EL L+ + DL KG+Q L++MV R+ E +D N+ +L++K+ +L + LEK+E SEN +IDE +I APLY QIL L+AEENAIEDT++YL +ALRRGVI+ ++FLK VR LSRKQF LRA +QKAR TAGLS
Sbjct: 218 DGTISEDTIRASLISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSALEKMENQSENNDIDEVIIPTAPLYKQILNLYAEENAIEDTIFYLGEALRRGVIDLDVFLKHVRLLSRKQFQLRALMQKARKTAGLS 387 HSP 2 Score: 141.354 bits (355), Expect = 5.782e-36 Identity = 59/130 (45.38%), Postives = 92/130 (70.77%), Query Frame = 2
Query: 413 YIHKNEAKKDILNALRAFGDLHPDEDIYVHTDGSRRDLICLKGTIPVNYKGSTYNIPIQIWLLSSHPFNAPLVFVRPTANMLIKPNKHVDNSGKVYMPYLSEWRAQKSDTYSMINMLCMIFAEFCPVYSK 802
Y +++ ++ +N + + DL P D YV DGS R+L+ L GTIPV Y+G+TYNIPI +WLL ++P+N P+ FV+PT++M IK KHVD +GK+Y+PYL EW+ +SD +I ++ ++F + PV+S+
Sbjct: 15 YKYRDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPPVFSR 144 The following BLAST results are available for this feature:
BLAST of TCONS_00047237 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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