TCONS_00047290-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00047290-protein
Unique NameTCONS_00047290-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length452

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00047290-protein ID=TCONS_00047290-protein|Name=TCONS_00047290-protein|organism=Clytia hemisphaerica|type=polypeptide|length=452bp
MFSIDRKRKLSSSKRNNTESSDEELEDFLFGNTNFKTASKDEVISDINVQ
GETETLLPFSISTKPSHFDGEKLVEEDTEKKQEQQQDEVQLLDPFEKKAA
WEDPDDDQIQVDLNEKKKFKRMRTNYQETSVSGKTFQKRLKERYERVLPA
PAWADISNVEKKDDEDKLFNTASDLLEKSSSLPSGKIQLTRKLNLNKKQP
DGLSITSLGFHPSAKIAFTASSGKRLTIFQADGEENKKLQSVFVRDFAIT
SAAFTDGGSKILMTGDKSRYIIFDLLAGNIIDVPGLRGKKGLNLDKFTIS
PDGSAVGFLGDYGYLHFASVESCQYMYSLKMNGTISAATYSKKSNQIYTT
GGDGEVYIWDARNRKCLHRFIDDGSIGSTSIACSNNGKFLAVGSKSGVVN
IYNNEGIENFKTPKPVKTMMNLKTEIDGTAFNSTSEILVTYTSHTKHAIK
MV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030123XLOC_030123Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00047290TCONS_00047290Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 236..274
e-value: 72.0
score: 5.3
coord: 186..230
e-value: 25.0
score: 8.2
coord: 363..403
e-value: 0.18
score: 20.9
coord: 322..360
e-value: 0.012
score: 24.8
IPR001680WD40 repeatPFAMPF00400WD40coord: 365..403
e-value: 0.14
score: 13.0
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 328..369
score: 9.406
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 70..449
e-value: 2.5E-31
score: 108.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 347..361
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 328..412
score: 10.944
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 200..442

Blast
[Close]
BLAST of TCONS_00047290-protein vs. Swiss-Prot (Human)
Match: UTP18 (U3 small nucleolar RNA-associated protein 18 homolog OS=Homo sapiens GN=UTP18 PE=1 SV=3)

HSP 1 Score: 253.062 bits (645), Expect = 3.440e-78
Identity = 138/388 (35.57%), Postives = 228/388 (58.76%), Query Frame = 0 
Query:   74 VEEDTEKKQEQQQDEVQLLDPFEKKAAWEDPDDDQIQVDLNEKKKFKR-MRTNYQETSVSGKTFQKRLKERYERVLPA-PAWADISN------VEKKDDEDKLFNTASDLLEKSSSLPSGKIQLTRKLNLNKKQPDGLSITSLGFHPSAKIAFTASSGKRLTIFQADGEENKKLQSVFVRDFAITSAAFTDGGSKILMTGDKSRYI-IFDLLAGNIIDVPGLRGKKGLNLDKFTISPDGSAVGFLGDYGYLHFASVESCQYMYSLKMNGTISAATYSKKSNQIYTTGGDGEVYIWDARNRKCLHRFIDDGSIGSTSIACSNNGKFLAVGSKSGVVNIYNNEGIENFKTPKPVKTMMNLKTEIDGTAFNSTSEILVTYTSHTKHAIKMV 452
            V+E  +    + ++E +   P +KK  W D +D+  ++      +F++ M  N  E+ +S    +KRLKE ++  +   PAWA+ +        E ++DED L     + +  S+SLP G +++    + N ++P    I+S+ FHP A+I   A     +++FQ DG+ N K+QS+++  F I  A F+  G ++L T   S+ + ++D+LAG +I V  +RG K   +  F +SPDGS +   G  GYLH  ++++ + + S+K+NG ++A+T+S  S ++Y + GDGEVY+WD  +RKCL+RF+D+GS+   SIA S NG+++A GS  GVVNIYN +       PKP+K +MNL T +    FN T+EIL   +   K A+++V
Sbjct:  115 VQEHEDSGDSEVENEAKGNFPPQKKPVWVDEEDEDEEMVDMMNNRFRKDMMKNASESKLSKDNLKKRLKEEFQHAMGGVPAWAETTKRKTSSDDESEEDEDDLLQRTGNFISTSTSLPRGILKMKNCQHANAERPTVARISSVQFHPGAQIVMVAGLDNAVSLFQVDGKTNPKIQSIYLERFPIFKACFSANGEEVLATSTHSKVLYVYDMLAGKLIPVHQVRGLKEKIVRSFEVSPDGSFLLINGIAGYLHLLAMKTKELIGSMKINGRVAASTFSSDSKKVYASSGDGEVYVWDVNSRKCLNRFVDEGSLYGLSIATSRNGQYVACGSNCGVVNIYNQDSCLQETNPKPIKAIMNLVTGVTSLTFNPTTEILAIASEKMKEAVRLV 502
The following BLAST results are available for this feature:
BLAST of TCONS_00047290-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UTP183.440e-7835.57U3 small nucleolar RNA-associated protein 18 homol... [more]
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