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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047290 ID=TCONS_00047290|Name=TCONS_00047290|organism=Clytia hemisphaerica|type=transcript|length=1435bpRun BLAST on NCBI protein sequence of TCONS_00047290-protein >TCONS_00047290-protein ID=TCONS_00047290-protein|Name=TCONS_00047290-protein|organism=Clytia hemisphaerica|type=polypeptide|length=452bp MFSIDRKRKLSSSKRNNTESSDEELEDFLFGNTNFKTASKDEVISDINVQRun BLAST on NCBI transcript from alignment at scaffold_124:118292..164791- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047290 ID=TCONS_00047290|Name=TCONS_00047290|organism=Clytia hemisphaerica|type=transcript|length=46500bp|location=Sequence derived from alignment at scaffold_124:118292..164791- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_124:118292..164791- >TCONS_00047290 ID=TCONS_00047290|Name=TCONS_00047290|organism=Clytia hemisphaerica|type=CDS|length=14916bp|location=Sequence derived from alignment at scaffold_124:118292..164791- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00047290 vs. Swiss-Prot (Human)
Match: UTP18 (U3 small nucleolar RNA-associated protein 18 homolog OS=Homo sapiens GN=UTP18 PE=1 SV=3) HSP 1 Score: 251.521 bits (641), Expect = 5.837e-76 Identity = 134/368 (36.41%), Postives = 219/368 (59.51%), Query Frame = 3
Query: 357 PFEKKAAWEDPDDDQIQVDLNEKKKFKR-MRTNYQETSVSGKTFQKRLKERYERVLPA-PAWADISNVE------KKDDEDKLFNTASDLLEKSSSLPSGKIQLTRKLNLNKKQPDGLSITSLGFHPSAKIAFTASSGKRLTIFQADGEENKKLQSVFVRDFAITSAAFTDGGSKILMTGDKSRYI-IFDLLAGNIIDVPGLRGKKGLNLDKFTISPDGSAVGFLGDYGYLHFASVESCQYMYSLKMNGTISAATYSKKSNQIYTTGGDGEVYIWDARNRKCLHRFIDDGSIGSTSIACSNNGKFLAVGSKSGVVNIYNNEGIENFKTPKPVKTMMNLKTEIDGTAFNSTSEILVTYTSHTKHAIKMV 1433
P +KK W D +D+ ++ +F++ M N E+ +S +KRLKE ++ + PAWA+ + + ++DED L + + S+SLP G +++ + N ++P I+S+ FHP A+I A +++FQ DG+ N K+QS+++ F I A F+ G ++L T S+ + ++D+LAG +I V +RG K + F +SPDGS + G GYLH ++++ + + S+K+NG ++A+T+S S ++Y + GDGEVY+WD +RKCL+RF+D+GS+ SIA S NG+++A GS GVVNIYN + PKP+K +MNL T + FN T+EIL + K A+++V
Sbjct: 135 PPQKKPVWVDEEDEDEEMVDMMNNRFRKDMMKNASESKLSKDNLKKRLKEEFQHAMGGVPAWAETTKRKTSSDDESEEDEDDLLQRTGNFISTSTSLPRGILKMKNCQHANAERPTVARISSVQFHPGAQIVMVAGLDNAVSLFQVDGKTNPKIQSIYLERFPIFKACFSANGEEVLATSTHSKVLYVYDMLAGKLIPVHQVRGLKEKIVRSFEVSPDGSFLLINGIAGYLHLLAMKTKELIGSMKINGRVAASTFSSDSKKVYASSGDGEVYVWDVNSRKCLNRFVDEGSLYGLSIATSRNGQYVACGSNCGVVNIYNQDSCLQETNPKPIKAIMNLVTGVTSLTFNPTTEILAIASEKMKEAVRLV 502 The following BLAST results are available for this feature:
BLAST of TCONS_00047290 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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